Documentation/Nightly/Modules/FiberBundleLabelSelect

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Introduction and Acknowledgements

This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the NA-MIC website. Author: Alex Yarmarkovich, Isomics, SPL Contributor1: Demian Wassermann, SPL Contact: Alex Yarmarkovich, <email>alexy@bwh.harvard.edu</email>

SlicerDMRI   Surgical Planning Laboratory   NAC   Tract selection

Module Description

This module is used for selecting a subset of DTI fiber tracts including or excluding certain fibers passing through a selected set of labels in the label map volume.

Use Cases

Most frequently used for these scenarios:

• Use Case 1: Filter out a subset of DTI fiber tracts which are passing through selected region(s) defined in the label map volume.
• Use Case 2: Filter out a subset of DTI fiber tracts which are NOT passing through selected region(s) defined in the label map volume.
• Use Case 3: A combination of Case 1 and Case 2.

Tutorials

Bundle Selection and Scalar Measurements

Panels and their use

A list of all the panels in the interface, their features, what they mean, and how to use them. For instance:

Parameters panel: Parameters: select an existing setting for the module or create a new one. IO panel: Input Label Map: select an existing label map volume. Input FiberBundle: Select the fibers that you want to filter. Output FiberBundle: Select the bundle that you want to create or modify from a list. Label Regions Definition panel : Labels to include: A comma separated list of label values to include in the output fiber bundles set. Combine Include Labels: OR or AND logical operation to combine individual label values in the above list. Labels to exclude: A comma separated list of label values to exclude from the output fiber bundles set. Combine Exclude Labels: OR or AND logical operation to combine individual label values in the above list. Similar Modules Tractography Label Map Seeding References Publications related to this module go here. Links to pdfs would be useful. For extensions: link to the source code repository and additional documentation Information for Developers