Documentation/Nightly/Modules/Contours

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Introduction and Acknowledgements

This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. Author: Csaba Pinter (PerkLab, Queen's University) Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email> Back to SlicerRT home

Cancer Care Ontario   Software Platform and Adaptive Radiotherapy Kit   Ontario Consortium for Adaptive Interventions in Radiation Oncology

Module Description

The Contours module manages contours and contour hierarchies.

Use Cases

• Load as ribbon, then compute DVH; the user wants to see the contours in 3D
• Edit contour 1, edit contour 2; see contour 1 while editing contour 2
• Create contour node, convert it to (empty) labelmap; do contouring on the labelmapo representation; convert to model
• Create/load labelmap or surface, create Contour node from that in Subject Hierarchy module

Contours module GUI

Contours representations

Tutorials

N/A

How to

Create contour from scratch

In the Editor module create a labelmap on the desired reference anatomical volume

In the Contours module, expand the box 'Create Contour From Representation'

Select the newly created labelmap, give it a name, and click 'Create'

Create contour from labelmap volume or model

In the Subject Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential subject hierarchy nodes' list to under a structure set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table

Alternatively, in the Contours module, expand the box 'Create Contour From Representation'

Select the desired labelmap volume or model, give it a name, and click 'Create'

Create new Structure set from scratch

Right-click on an existing Study node and select 'Create child structure set'. This menu item is only available for Study level nodes

Edit an existing contour

See page via link above

Panels and their use

• Current contour(s): Currently selected contour node (vtkMRMLContourNode) or conotur hierarchy node (vtkMRMLContourHierarchyNode)
• Active representation: The active representation (Ribbon model / Indexed labelmap / Closed surface model) of the selected contour. If a hierarchy is selected in which the active representations of the contained contours do not match, Various is indicated
• Change active representation: This box contains controls to convert from one representation to another

Similar Modules

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References

Issue on SlicerRT ticketing system here