Documentation/4.1/SlicerApplication/LookupTables/TractographyColors

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Template:Documentation/4.1/TractographyColors

• Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
• Go here to create a text file in Slicer LUT format.
• If changing the order of the table, the indices can be recreated with this tcl script.

This is the look-up table for the parcellation of the white matter of the brain.

• Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab

Lookup table

integer_label	text_label	color	notes
0		rgba(0,0,0,0)	background
1	corpus callosum	rgb(255, 215, 0)	CC
2	genu of the corpus callosum	rgb(225, 215, 0)	CC genu
3	body of the corpus callosum	rgb(195, 215, 0)	CC body
4	splenium of the corpus callosum	rgb(165, 215, 0)	CC splenium
5	dorsal hippocampal comissure	rgb(122, 120, 170)	DHC
6	anterior comissure	rgb(92, 140, 170)	AC
7	posterior comissure	rgb(62, 160, 170)	PC
8	forniceal comissure	rgb( 32, 180, 170)	FC
9	pontine tract	rgb(92, 161, 124)	PT
10	short cortico-cortical pathway	rgb(83,146,164)	U
11	right arcuate fasicle	rgb(221,130,101)	r AF
12	left arcuate fasicle	rgb(216,101,79)	l AF
13	right inferior occipito-frontal fasicle	rgb(144,238,144)	r IOFF
14	left inferior occipito-frontal fasicle	rgb( 60, 179, 113)	l IOFF
15	right inferior longitudinal fasicle	rgb(220,245,20)	r ILF
16	left inferior longitudinal fasicle	rgb(176, 176, 8)	l ILF
17	right uncinate fasicle	rgb(255,250,220)	r UF
18	left uncinate fasicle	rgb(230,220,70)	l UF
19	right cortico-spinal tract	rgb(230, 230, 250)	r CST
20	left cortico-spinal tract	rgb(200,200,235)	l CST
21	right optic radiation	rgb(135, 206, 235)	r OR
22	left optic radiation	rgb(0,151,206)	l OR
23	right cingulum bundle	rgb(255, 99, 71)	r CB
24	left cingulum bundle	rgb(250, 90, 90)	l CB
25	right superior longitudinal fasicle I	rgb(183,214,211)	r SLF I
26	left superior longitudinal fasicle I	rgb(152,189,207)	l SLF I
27	right superior longitudinal fasicle II	rgb(178,212,242)	r SLF II
28	left superior longitudinal fasicle II	rgb(111,184,210)	l SLF II
29	right superior longitudinal fasicle III	rgb(111,197,131)	r SLF III
30	left superior longitudinal fasicle III	rgb(68,172,100)	l SLF III
31	right middle longitudinal fasicle	rgb(85,188,255)	r MdLF
32	left middle longitudinal fasicle	rgb( 65, 105, 225)	l MdLF
33	right extreme capsule	rgb(196, 110, 0)	r EmC
34	left extreme capsule	rgb(160, 82, 45)	l EmC
35	right superior occipito-frontal fasicle	rgb(216,191,216)	r SOFF
36	left superior occipito-frontal fasicle	rgb(221, 160, 221)	l SOFF
37	right cortico-thalamical pathways	rgb(245, 222, 179)	r CT
38	left cortico-thalamical pathways	rgb(210, 180, 140)	l CT
39	right cortico-striatal pathways	rgb(244, 164, 96)	r CS
40	left cortico-striatal pathways	rgb(177,122,101)	l CS
41	right cortico-pontine projections	rgb(250,250,225)	r CP
42	left cortico-pontine projections	rgb(200,200,200)	l CP
43	peritumoral fibers	rgb(100, 177, 198)	PF
44		rgb(255,255,255)
45		rgb(255,255,255)
46		rgb(255,255,255)
47		rgb(255,255,255)
48		rgb(255,255,255)
49		rgb(255,255,255)
50		rgb(255,255,255)
51		rgb(255,255,255)
52		rgb(255,255,255)
53		rgb(255,255,255)
54		rgb(255,255,255)
55		rgb(255,255,255)
56		rgb(255,255,255)
57		rgb(255,255,255)
58		rgb(255,255,255)
59		rgb(255,255,255)
60		rgb(255,255,255)
61	Probe 1	rgb(252,115,105)	P1
62	Probe 2	rgb(222,115,105)	P2
63	Probe 3	rgb(192,115,105)	P3
64	Probe 4	rgb(162,115,105)	P4