Documentation/4.0/Modules/TractographyDisplay

Introduction and Acknowledgements

This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the NA-MIC website. Author: Isaiah Norton, Goldby Lab Author: Demian Wassermann, SPL Contributor1: Steve Pieper, Isomics Contributor1: Alex Yarmanovich, Isomics Contact: Demian Wassermann, <email>demian@bwh.harvard.edu</email>

Surgical Planning Laboratory

Module Description

Allows the user to manipulate several different characteristics of the traced white matter tracts. Examples are: change of color; display of the fractional anisotropy along the tract; display of the tracts as tubes or lines; interactive selection of the tracts; and cropping.

Use Cases

Most frequently used for these scenarios:

• Use Case 1: Change the scalar quantity displayed along the tract, like Fractional Anisotropy or Color By Orientation
• Use Case 2: Display the tracts as lines or tubes
• Use Case 2: Interactive selection or cropping of a certain bundle.

Tutorials

Links to tutorials that use this module

Panels and their use

A list of all the panels in the interface, their features, what they mean, and how to use them. For instance:

Input panel1: First input Second input Parameters panel: First parameter Second parameter Output panel: First output Second output Viewing panel:	Name of panel 1
Input panel2: First input Second input Parameters panel: First parameter Second parameter Output panel: First output Second output Viewing panel:	Name of panel 2

Similar Modules

• Point to other modules that have similar functionality

References

Publications related to this module go here. Links to pdfs would be useful. For extensions: link to the source code repository and additional documentation

Information for Developers

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