Modules:PlastimatchDICOMRT

Return to Slicer 3.6 Documentation

Plastimatch > DICOM-RT Import

DICOM-RT Structure Set

DICOM-RT Dose

General Information

Module Type & Category

Type: CLI

Category: Plastimatch

Authors, Collaborators & Contact

• Authors: See AUTHORS.TXT contained within the package
• Contact: Greg Sharp, Department of Radiation Oncology, Massachusetts General Hospital (gcsharp@partners.org)
• Web page: http://plastimatch.org

Module Description

This is the DICOM / DICOM-RT import module. It allows you to select a directory containing DICOM-RT structure sets and/or dose, which it will convert into 3D Slicer labelmap and/or scalar image. This module also loads the DICOM CT image without requiring the need to use the Slicer volume import wizard.

Note: In a Slicer labelmap, a voxel can only belong to one structure. However, DICOM-RT allows a region to belong to any number of strucutres. Therefore, importing DICOM-RT structure sets as Slicer labelmaps will usually result in a loss of data. This module uses a "last structure wins" strategy for assigning labels to overlapping volumes.

Note: Because DICOM-RT structures are specified as polylines, there is a small loss of fidelity when they are converted into rasterized volumes.

Usage

Tutorials

Download tutorial

(Download tutorial data)

Quick Tour of Features and Use

Input/Output panel: Input DICOM directory: Here you choose any file in the directory which contains the DICOM-RT data. Reference Volume (to set size): This is an optional field. But if your dicom directory does not contain a CT, it is required. Here you choose any loaded volume. The import module will create a labelmap at the same resolution and pixel spacing as the reference volume that you choose here. Output Image: Here you choose where to put the output CT image. Unless you want to replace an existing volume, you should choose "Create New Volume". Output Labelmap: Here you choose where to put the output labelmap. Unless you want to replace an existing volume, you should choose "Create New Volume". Output Dose Image: Here you choose where to put the output dose image. Unless you want to replace an existing volume, you should choose "Create New Volume".

User Interface

Development

Notes from the Developer(s)

Developer-oriented documentation is found on the plastimatch web site: http://plastimatch.org

Dependencies

This module has no dependencies.

Tests

Plastimatch features approximately 100 test cases.

Known bugs

• http://forge.abcd.harvard.edu/gf/project/plastimatch/tracker/?action=TrackerItemBrowse&tracker_id=450

Usability issues

Please report usability issues to the bug tracker.

• http://forge.abcd.harvard.edu/gf/project/plastimatch/tracker/?action=TrackerItemBrowse&tracker_id=450

Source code & documentation

We recommended to download the latest source code from subversion:

• Project page
• Source download (svn access)

Documentation:

• http://plastimatch.org

More Information

Acknowledgment

National Institutes of Health
NIH / NCI 6-PO1 CA 21239
Federal share of program income earned by MGH on C06CA059267

Progetto Rocca Foundation
A collaboration between MIT and Politecnico di Milano

References

• G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.