CCA:Atlases:Florins 2010 Hierarchy
From Slicer Wiki
Home < CCA:Atlases:Florins 2010 Hierarchy
Contents
- 1 body
- 1.1 head
- 1.2 neck
- 1.3 thorax
- 1.4 abdomen
- 1.5 female external genitalia
- 1.6 male external genitalia
- 1.7 upper extremity
- 1.8 lower extremity
- 1.9 peripheral nervous system
- 1.10 circulatory system
- 1.11 systemic venous system
- 1.12 pulmonary arterial system
- 1.13 pulmonary venous system
- 1.14 lymphatic system
- 2 material
- 3 pathology
- 4 segmentation regions
body
head
soft tissue of the head
- skin of head
- muscles of head
- masticatory muscles
- temporal muscle
- masseter muscle
- lateral pterygoid muscle
- medial pterygoid muscle
- facial muscles
- frontal muscle
- corrugator muscle
- orbicularis occulis muscle
- levator angulis oris muscle
- orbicularis oris muscle
- risorius muscle
- nasalis muscle
- mentalis muscle
- depressor labii inferioris muscle
- depressor angulis oris muscle
- buccinator muscle
- occipitalis muscle
- masticatory muscles
- salivary glands
- parotid glands
- sublingual glands
- submandibular glands
- tongue
- soft palate
- tonsils
- external ear
- middle ear
- internal ear
- eyes
- extraocular muscles
skull
- frontal bone
- parietal bone
- temporal bone
- sphenoid bone
- ethmoid bone
- occipital bone
- maxilla
- zygomatic bone
- lacrimal bone
- vomer bone
- palatine bone
- mandible
teeth
central nervous system
meninges
- dura mater
- arachnoid
- pia mater
Brain
- CSF spaces
- ventricles
- right lateral ventricle
- left lateral ventricle
- third ventricle
- cerebral aqueduct
- fourth ventricle
- subarachnoid space (including cysterns)
- ventricles
- brain parenchyma
- gray matter of brain
- telencephalon
- cerebral cortex
- frontal lobe
- superior frontal gyrus
- middle frontal gyrus
- inferior frontal gyrus
- orbital gyri
- straight gyrus
- precentral gyrus
- paracentral lobule
- frontal pole
- temporal lobe
- superior temporal gyrus
- middle temporal gyrus
- inferior temporal gyrus
- hippocampus
- parahippocampal gyrus
- temporal part of medial occipitotemporal gyrus
- temporal part of lateral occipitotemporal gyrus
- uncus
- temporal pole
- parietal lobe
- postcentral gyrus
- superior parietal lobule
- inferior parietal lobule
- precuneus
- occipital lobe
- superior occipital gyri
- inferior occipital gyri
- gyrus descendens
- lingual gyrus
- occipital part of medial occipitotemporal gyrus
- occipital part of lateral occipitotemporal gyrus
- cuneus
- occipital pole
- insular lobe
- limen of insula
- long insular gyrus
- short insular gyri
- limbic lobe
- cingulate gyrus
- paraterminal gyrus
- indusium griseum
- olfactory bulb
- olfactory tract
- frontal lobe
- subcortical gray matter of telencephalon
- striatum
- nucleus accumbens
- caudate nucleus
- putamen
- pallidum
- globus pallidus pars externa
- globus pallidus pars interna
- septal nuclei
- amygdaloid complex
- claustrum
- striatum
- cerebral cortex
- diencephalon
- thalamus
- thalamic nuclei
- subthalamus
- subthalamic nucleus
- hypothalamus
- hypothalamic nuclei
- mamillary bodies
- substantia perforata
- anterior substantia perforata
- posterior substantia perforata
- pituitary infundibulum
- epithalamus
- habenula
- habenular nuclei
- pineal body
- habenula
- gray matter of mesencephalon
- red nucleus
- substantia nigra
- substantia nigra pars compacta
- substantia nigra pars reticularis
- superior colliculus
- inferior colliculus
- occulomotor nerve nucleus (CN III)
- trochlear nerve nucleus (CN IV)
- mesencephalic nucleus of the trigeminal nerve (CN V)
- periaqueductal gray matter
- gray matter of metencephalon
- gray matter of pons
- principal sensory nucleus of trigeminal nerve (CN V)
- motor nucleus of the trigeminal nerve (CN V)
- abducent nerve nucleus
- facial nerve nucleus
- cerebellar gray matter
- cerebellar cortex
- subcortical cerebellar gray matter
- dentate nucleus
- emboliform nucleus
- globose nucleus
- fastigial nucleus
- gray matter of myelencephalon (medulla oblongata)
- spinal nucleus of the trigeminal nerve (CN V)
- cochlear nuclei (CN VIII)
- vestibular nuclei (CN VIII)
- superior salivatory nucleus
- inferior salivatory nucleus
- nucleus ambiguus
- posterior (dorsal nucleus) of the vagus nerve (CN X)
- solitary tract nucleus
- hipoglossal nerve nucleus
- gray matter of pons
- thalamus
- telencephalon
- cerebral white matter
- association white matter tracts
- U-fibers
- superior longitudinal fasciculus
- inferior longitudinal fasciculus
- arcuate fasciculus
- uncinate fasciculus
- cingulum
- projection fibers
- corticospinal tract
- corticomesencephalic tract
- corticopontine tract
- corticobulbar tract
- optic radiation
- thalamo-cortical projection fibers
- medial lemniscus
- lateral lemniscus
- superior cerebellar peduncles
- middle cerebellar peduncles
- inferior cerebellar peduncles
- optic nerves, optic chiasm, optic tracts
- fornix
- mamilo-thalamic tract
- mamilo-mesencephalic tract
- thalamic fasciculus
- ansa lenticularis
- lenticular fasciculus
- commissural fibers
- corpus callosum
- anterior commissure
- posterior commissure
- association white matter tracts
- cerebellar white matter
- gray matter of brain
spinal cord
- gray matter of spinal cord
- anterior horn
- posterior horn
- intermediate horn
- white matter of spinal cord
- Anterior column
- Lateral column
- Posterior column
endocrine system of brain
- pituitary gland
- adenohypophysis
- neurohypophysis
neck
soft tissue of neck
skin of neck
muscles of neck
pharynx
larynx
thyroid gland
parathyroid glands
skeleton of neck
- hyoid bone
- cervical spinal column
- cervical vertebrae
- cervical vertebra C1
- cervical vertebra C2
- cervical vertebra C3
- cervical vertebra C4
- cervical vertebra C5
- cervical vertebra C6
- cervical vertebra C7
- cervical vertebrae
thorax
soft tissue of thorax
soft tissue of thoracic wall
Skin of thoracic wall
muscles of thoracic wall
contents of thoracic cavity
trachea
bronchi
- right main bronchus
- left main bronchus
Right lung
- superior lobe of right lung
- middle lobe of right lung
- inferior lobe of right lung
Left lung
- superior lobe of left lung
- inferior lobe of left lung
Pleura
- parietal pleura
- visceral pleura
- pleural cavity
Heart
- right atrium
- left atrium
- atrial septum
- ventricular septum
- right ventricle of heart
- papillary muscles of right ventricle of heart
- chordae tendineae of right ventricle of heart
- left ventricle of heart
- papillary muscles of left ventricle of heart
- chordae tendineae of left ventricle of heart
- mitral valve
- tricuspid valve
- aortic valve
- pulmonary valve
pericardium
- pericardial cavity
esophagus
thymus
mediastinum
skeleton of thorax
- thoracic vertebral column
- thoracic vertebrae
- thoracic vertebra T1
- thoracic vertebra T2
- thoracic vertebra T3
- thoracic vertebra T4
- thoracic vertebra T5
- thoracic vertebra T6
- thoracic vertebra T7
- thoracic vertebra T8
- thoracic vertebra T9
- thoracic vertebra T10
- thoracic vertebra T11
- thoracic vertebra T12
- thoracic vertebrae
- ribs
- rib I
- rib II
- rib III
- rib IV
- rib V
- rib VI
- rib VII
- rib VIII
- rib IX
- rib X
- rib XI
- rib XII
- sternum
- manubrium
- body of sternum
- xyphoid process
- clavicles
abdomen
soft tissue of abdomen
soft tissue of abdominal wall
skin of abdominal wall
muscles of abdominal wall
contents of abdominal cavity
- peritoneum
- parietal peritoneum
- visceral peritoneum
- omentum
- peritoneal cavity
- bursa omentalis
- Douglas' recess
- falciform ligament of liver
- mesentery
- mesocolon
- transverse mesocolon
- sigmoid mesocolon
- broad ligament of uterus
- mesometrium
- mesosalpinx
- mesovarium
- retroperitoneal space
- stomach
- cardia
- fundus of stomach
- body of stomach
- pylorus
- duodenum
- ampulla of Vater
- small bowel
- jejunum
- ileum
- colon
- cecum
- ileocecal valve
- appendix
- ascending colon
- transverse colon
- sigmoid colon
- rectum
- anus
- cecum
- liver
- capsule of liver
- right lobe of liver
- left lobe of liver
- caudate lobe of liver
- quadrate lobe of liver
- ligamentum teres
- biliary tree
- right hepatic duct
- left hepatic duct
- common hepatic duct
- common bile duct
- cystic duct
- gallbladder
- pancreas
- head of pancreas
- body of pancreas
- tail of pancreas
- pancreatic duct
- islets of Langerhans
- spleen
- right kidney
- parenchyma of right kidney
- cortex of right kidney
- medulla of right kidney
- parenchyma of right kidney
- right renal pelvis
- left kidney
- parenchyma of left kidney
- cortex of left kidney
- medulla of left kidney
- parenchyma of left kidney
- left renal pelvis
- right ureter
- left ureter
- urinary bladder
- uretra
- suprarenal glands
- corticosuprarenal glands
- medullosuprarenal glands
- female internal genitalia
- uterus
- fundus of uterus
- body of uterus
- cervix
- round ligaments
- uterosacral ligaments
- pubocervical ligament
- fallopian tubes
- ovaries
- vagina
- uterus
- male internal genitalia
- prostate
- seminal vesicles
- deferent ducts
skeleton of Abdomen
lumbar spine
- lumbar vertebrae
- lumbar vertebra L1
- lumbar vertebra L2
- lumbar vertebra L3
- lumbar vertebra L4
- lumbar vertebra L5
sacrum
coccis
coxal bones
female external genitalia
vulva
- vulval vestibule
- hymen
- major labia
- minor labia
- praeputium
- clitoris
- glans of clitoris
- body of clitoris
- corpus cavernosum of clitoris
- prepuce of clitoris
- Bartolin's glands
male external genitalia
penis
- glans of penis
- meatus
- shaft
- corpus cavernosum of penis
- spongious body
- prepuce of penis
scrotum
- skin of scrotum
- dartos layer
- cremaster muscle
- testicles
- epididimis
- spermatic cord
upper extremity
arm and shoulder
soft tissue of arm and shoulder
- skin of arm and shoulder
- muscles and tendons of arm and shoulder
skeleton of arm and shoulder
- scapula
- humerus
forearm
soft tissue of forearm
- skin of forearm
- muscles and tendons of forearm
skeleton of forearm
- radius
- ulna
hand
soft tissue of hand
- skin of hand
- muscles and tendons of hand
skeleton of hand
- carpus
- scaphoid
- lunate
- triquetrum
- pisiform
- trapezium
- trapezoid
- capitate
- hamate
- metacarpus
- metacarpals
- metacarpal I
- metacarpal II
- metacarpal III
- metacarpal IV
- metacarpal V
- metacarpals
- phalanges of hand
lower extremity
hip and thigh
soft tissue of hip and thigh
- skin of hip and thigh
- muscles and tendons of hip and thigh
skeleton of hip and thigh
- femur
leg
soft tissue of leg
- skin of leg
- muscles and tendons of leg
skeleton of leg
- tibia
- peroneus
foot
soft tissue of foot
- skin of foot
- muscles and tendons of foot
skeleton of foot
- tarsus
- talus
- calcaneus
- navicular
- first cuneiform
- second cuneiform
- third cuneiform
- cuboid
- metatarsus
- metatarsals
- metatarsal I
- metatarsal II
- metatarsal III
- metatarsal IV
- metatarsal V
- metatarsals
- phalanges of foot
peripheral nervous system
cranial nerves
- olfactory nerve (CN I)
- optic nerve (CN II)
- oculomotor nerve (CN III)
- rrochlear nerve (CN IV)
- rrigeminal nerve (CN V)
- abducent nerve (CN VI)
- dacial nerve (CN VII)
- intermediate nerve (CN VII b)
- vestibulo-cochlear nerve (CN VIII)
- glossopharyngeal nerve (CN IX)
- vagal nerve (CN X)
- accessory nerve (CN XI)
- hypoglossal nerve (CN XII)
spinal nerves
nervous plexi and intercostal nerves
- cervical plexus
- lesser occipital nerve
- great auricular nerve
- transverse cervical nerve
- supraclavicular nerve
- ansa cervicalis
- phrenic nerve
- segmental nerve branches
- segmental nerve branch C1
- segmental nerve branch C2
- segmental nerve branch C3
- segmental nerve branch C4
- brachial plexus
- dorsal scapular nerve
- suprascapular nerve
- nerve to subclavius
- lateral pectoral nerve
- musculocutaneus nerve
- axillary nerve
- median nerve
- ulnar nerve
- radial nerve
- medial cutaneous nerve of the arm
- medial cutaneous nerve of the forearm
- lower subscapular nerve
- thoracodorsal nerve
- medial pectoral nerve
- upper subscapular nerve
- long thoracic nerve
- intercostal nerves
- intercostal nerve I
- intercostal nerve II
- intercostal nerve III
- intercostal nerve IV
- intercostal nerve V
- intercostal nerve VI
- intercostal nerve VII
- intercostal nerve VIII
- intercostal nerve IX
- intercostal nerve X
- intercostal nerve XI
- lumbosacral plexus
- iliohypogastric nerve
- ilioinguinal nerve
- genitofemoral nerve
- lateral cutaneous femoral nerve
- femoral nerve
- obturator nerve
- accessory obturator nerve
- sciatic nerve
- common fibular nerve
- tibial nerve
- perforating cutaneous nerve
- pudendal nerve
- anococcigeal nerves
circulatory system
systemic arterial system
- aorta
- right coronary artery
- left coronary artery
- aortic arch
- right brachiocephalic trunc
- right subclavian artery
- right vertebral artery
- anterior spinal artery
- posterior inferior cerebellar artery
- basilar artery
- anterior inferior cerebellar artery
- pontine arteries
- superior cerebellar artery
- posterior cerebellar artery
- internal thoracic artery
- thyrocervical trunk
- costocervical trunk
- dorsal scapular artery
- axillary artery
- brachial artery
- right vertebral artery
- right common carotid artery
- right external carotid artery
- right internal carotid artery
- right opthalmic artery
- right anterior cerebral artery
- anterior communicating artery
- right middle cerebral artery
- right posterior communicating artery
- right subclavian artery
- left common carotid artery
- left external carotid artery
- left internal carotid artery
- see right internal carotid artery
- left subclavian artery
- see right subclavian artery
- right brachiocephalic trunc
- descending thoracic aorta
- bronchial arteries
- esophageal arteries
- posterior intercostal arteries
- abdominal aorta
- inferior phrenic artery
- celiac trunk
- superior mesenteric artery
- middle suprarenal artery
- renal artery
- gonadal (ovarian/testicular) artery
- lumbar arteries
- inferior mesenteric artery
- median sacral artery
- right common iliac artery
- right external iliac artery
- inferior epigastric artery
- deep circumflex iliac artery
- femoral artery
- right internal iliac artery
- right iliolumbar artery
- right lateral sacral arteries
- right superior gluteal artery
- right obturator artery
- right inferior gluteal artery
- right umbilical artery
- right uterine/deferential artery
- right inferior vesical artery
- right middle rectal artery
- right internal pudendal artery
- right external iliac artery
- left common iliac artery
- left external iliac artery
- left internal iliac artery
systemic venous system
- superior vena cava
- inferior vena cava
- azygos vein
- hemyazygos vein
- portal vein
pulmonary arterial system
- right pulmonary artery
- left pulmonary artery
pulmonary venous system
- right superior pulmonary vein
- right inferior pulmonary vein
- left superior pulmonary vein
- left inferior pulmonary vein
lymphatic system
lymphatic ducts
- right lymphatic duct
- thoracic duct
lymph node groups
- cervical lymph nodes
- supraclavicular lymph nodes
- occipital lymph nodes
- pre-auricular lymph nodes
- infraclavicular lymph nodes
- axillary lymph nodes
- pectoral lymph nodes
- epitrochlear/brachial lymph nodes
- mediastinal lymph nodes
- mesenteric lymph nodes
- para-aortal lymph nodes
- iliac lymph nodes
- inguinal lymph nodes
- femoral lymph nodes
- popliteal lymph nodes
material
- air
- liquid
biological material
- blood
- cerebro-spinal fluid
tissue
- gray matter
- white matter
- bone
- cartilage
- fat
- connective tissue
pathology
- tumor
- edema
- bleeding
- necrosis
- clot
segmentation regions
- unsegmented region
- background
- annotation
- annotation 1
- annotation 2
- annotation 3
- annotation 4
- annotation 5
- annotation 6
- annotation 7
- annotation 8
- annotation 9
- annotation 10
- annotation 11
- annotation 12
- annotation 13
- annotation 14
- annotation 15
- annotation 16
- user defined region
- region 1
- region 2
- region 3
- region 4
- region 5
- region 6
- region 7
- region 8
- region 9
- region 10
- region 12
- region 13
- region 14
- region 15
- region 16
