Slicer3:Mori-Atlas labels
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- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
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- List
2010 Brain LUT for Slicer general applications
integer_label | text_label | color | notes |
---|---|---|---|
0 | Background | rgba(0,0,0,0) | black |
1 | Bone | rgb(240,255,240) | honeydew |
2 | Skin | rgb(233, 150, 122) | darksalmon |
3 | Muscles | rgb(205,92,92) | indianred |
4 | Fat | rgb(238,232,170) | palegoldenrod |
5 | CSF | rgb(0,191,255) | deepskyblue |
6 | Ventricles | rgb(65,105,225) | royalblue |
7 | Arteries | rgb(250,128,114) | salmon |
8 | Veins | rgb(70,130,180) | steelblue |
9 | Gray matter | rgb(211,211,211) | lightgrey |
10 | White matter | rgb(255,255,240) | ivory |
11 | Tumor | rgb(144,238,144) | lightgreen |
12 | Edema | rgb(224,255,255) | lightcyan |
13 | Necrosis | rgb(216,191,216) | thistle |
14 | Structure 1 | rgb(238,130,238) | violet |
15 | Structure 2 | rgb(255,215,0) | gold |
Look-up Table for the Mori WM Atlas labels
Work in progress.
integer_label | text_label | color |
---|---|---|
0 | Background | rgba(0,0,0,0) |
1 | MCP_Middle_cerebellar_peduncle | gold |
2 | PCT_Pontine_crossing_tract_(a_part_of_MCP) | violet |
3 | GCC_Genu_of_corpus_callosum | lightpink |
4 | BCC_Body_of_corpus_callosum | pink |
5 | SCC_Splenium_of_corpus_callosum | deeppink |
6 | FX_Fornix_(column_and_body_of_fornix) | violet |
7 | CST-R_Corticospinal_tract_right | violet |
8 | CST-L_Corticospinal_tract_left | violet |
9 | ML-R_Medial_lemniscus_right | palegreen |
10 | ML-L_Medial_lemniscus_left | palegreen |
11 | ICP-R_Inferior_cerebellar_peduncle_right | palegreen |
12 | ICP-L_Inferior_cerebellar_peduncle_left | palegreen |
13 | SCP-R_Superior_cerebellar_peduncle_right | palegreen |
14 | SCP-L_Superior_cerebellar_peduncle_left | palegreen |
15 | CP-R_Cerebral_peduncle_right | palegreen |
16 | CP-L_Cerebral_peduncle_left | palegreen |
17 | ALIC-R_Anterior_limb_of_internal_capsule_right | palegreen |
18 ALIC-L_Anterior_limb_of_internal_capsule_left
19 PLIC-R_Posterior_limb_of_internal_capsule_right 20 PLIC-L_Posterior_limb_of_internal_capsule_left 21 RLIC-R_Retrolenticular_part_of_internal_capsule_right 22 RLIC-L_Retrolenticular_part_of_internal_capsule_left 23 ACR-R_Anterior_corona_radiata_right 24 ACR-L_Anterior_corona_radiata_left 25 SCR-R_Superior_corona_radiata_right 26 SCR-L_Superior_corona_radiata_left 27 PCR-R_Posterior_corona_radiata_right 28 PCR-L_Posterior_corona_radiata_left 29 PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right 30 PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left 31 SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right 32 SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left 33 EC-R_External_capsule_right 34 EC-L_External_capsule_left 35 CGC-R_Cingulum_(cingulate_gyrus)_right 36 CGC-L_Cingulum_(cingulate_gyrus)_left 37 CGH-R_Cingulum_(hippocampus)_right 38 CGH-L_Cingulum_(hippocampus)_left 39 FX-R_Fornix_Stria_terminalis_right 40 FX-L_Fornix_Stria_terminalis_left 41 SLF-R_Superior_longitudinal_fasciculus_right 42 SLF-L_Superior_longitudinal_fasciculus_left 43 SFO-R_Superior_fronto-occipital_fasciculus_right 44 SFO-R_Superior_fronto-occipital_fasciculus_left 45 IFO-R_Inferior_fronto-occipital_fasciculus_right 46 IFO-L_Inferior_fronto-occipital_fasciculus_left 47 UNC-R_Uncinate_fasciculus_right 48 UNC-L_Uncinate_fasciculus_left 49 TAP-R_Tapatum_right 50 TAP-L_Tapatum_left |