Difference between revisions of "Slicer3: Image Guided Therapy (IGT)"
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For purchasing information for user-supplied materials, see the "Tutorial Slides Part 1 - Background and Materials" slides. | For purchasing information for user-supplied materials, see the "Tutorial Slides Part 1 - Background and Materials" slides. | ||
| + | ==Steps== | ||
| + | |||
| + | # Assemble Robot ([http://wiki.na-mic.org/Wiki/images/8/81/LEGOIGTAndMedicalRoboticsTutorial_RobotAssemblyInstructions.pdf LEGOIGTAndMedicalRoboticsTutorial_RobotAssemblyInstructions.pdf Robot assembly instruction] | ||
| + | # Assemble Phantom [http://wiki.na-mic.org/Wiki/images/0/0d/LEGOIGTAndMedicalRoboticsTutorial_PhantomAssemblyInstructions.pdf LEGOIGTAndMedicalRoboticsTutorial_PhantomAssemblyInstructions.pdf Phantom assembly instruction] | ||
| + | # Phantom placement guide: [http://wiki.na-mic.org/Wiki/images/6/64/LEGOIGTAndMedicalRoboticsTutorial_PhantomPlacementGuide.pdf LEGOIGTAndMedicalRoboticsTutorial_PhantomPlacementGuide.pdf Phantom assembly instruction] | ||
| + | |||
| + | |||
| + | ==References== | ||
| + | * Tutorial Slides Part 1 - Background and Materials: [http://wiki.na-mic.org/Wiki/images/d/d1/LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf] | ||
| + | |||
| + | * Tutorial Slides Part 2 - Basic Tutorial: [http://wiki.na-mic.org/Wiki/images/a/ab/LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf] | ||
| + | |||
| + | * Tutorial Slides Part 3 - Advanced Tutorial: [http://wiki.na-mic.org/Wiki/images/f/f4/LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf] | ||
| + | |||
| + | * CT volume of the LEGO phantom: [http://wiki.na-mic.org/Wiki/images/6/69/000003.SER.zip 000003.SER.zip] | ||
| + | |||
| + | * 3D Slicer LEGO tutorial module (including code to interface between a LEGO robot and a C++ program): Available on the NA-MIC Sandbox - access [http://www.na-mic.org/ViewVC/index.cgi/trunk/LegoTutorial/?root=NAMICSandBox online] or through the [http://wiki.na-mic.org/Wiki/index.php/Engineering:SandBox NA-MIC subversion system] | ||
| + | |||
| + | * MICCAI 2007 "Open Source and Open Data for MICCAI" workshop paper: [[Image:AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf|Image:AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf]] | ||
Revision as of 14:40, 25 November 2008
Home < Slicer3: Image Guided Therapy (IGT)Contents
Introduction
The Slicer3 IGT tools are intended to enable research in image guided therapy. They leverage the Slicer environment and augment it with a number of IGT specific functionalities and modules. One key element of this capability is Open IGT link, a communication protocol to link 3D Slicer to a variety of devices.
- I am a neurosurgeon who is using the BrainLabs Navigation system. I would like to use Slicer to do some research in DTI visualization during procedures. What do I do?
The following scenario is being developed and tested: The integration of BrainLab and Slicer3
Use-case scenario 2: IGT robotics tutorial with LEGO Mindstorms
- I am a professor who wants to use Slicer to educate my students about the basics of robotics in IGT
Materials
Provided by NA-MIC and the Surgical Planning Lab:
- 3D Slicer v. 3 tutorial module
- CT volume of the phantom
- Tutorial slides
- Assembly instructions for the robot and the phantom
- Phantom placement guide
Provided by tutorial participants:
- 1 LEGO Mindstorms NXT kit
- 1 LEGO Deluxe Brick box
- 2 pom-poms
- Linux computer with root access or Windows with administrator privileges
For purchasing information for user-supplied materials, see the "Tutorial Slides Part 1 - Background and Materials" slides.
Steps
- Assemble Robot (LEGOIGTAndMedicalRoboticsTutorial_RobotAssemblyInstructions.pdf Robot assembly instruction
- Assemble Phantom LEGOIGTAndMedicalRoboticsTutorial_PhantomAssemblyInstructions.pdf Phantom assembly instruction
- Phantom placement guide: LEGOIGTAndMedicalRoboticsTutorial_PhantomPlacementGuide.pdf Phantom assembly instruction
References
- Tutorial Slides Part 1 - Background and Materials: LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf
- Tutorial Slides Part 2 - Basic Tutorial: LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf
- Tutorial Slides Part 3 - Advanced Tutorial: LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf
- CT volume of the LEGO phantom: 000003.SER.zip
- 3D Slicer LEGO tutorial module (including code to interface between a LEGO robot and a C++ program): Available on the NA-MIC Sandbox - access online or through the NA-MIC subversion system
- MICCAI 2007 "Open Source and Open Data for MICCAI" workshop paper: Image:AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf
List of devices that have been linked successfully
- Support medical tracking systems
- All devices interfaced to IGSTK (Noby inserts link), including
- Flashpoint (Image Guided Technologies, Boulder, CO)
- Robin Medical
- scanners (Noby: which ones)
- robots (Noby which ones)
- IGT Modules in Slicer 3.3
Only what is in Slicer 3.3 nightly!
- For more information
