Difference between revisions of "Documentation/Nightly/Modules/KidneyStoneCalculator"
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<br> | <br> | ||
'''Authors:''' Frédéric Panthier (1 & 2), Lounès Illoul (3), Laurent Berthe (3), Steeve Doizi (1), Oliver Traxer (1) | '''Authors:''' Frédéric Panthier (1 & 2), Lounès Illoul (3), Laurent Berthe (3), Steeve Doizi (1), Oliver Traxer (1) | ||
| + | <br> | ||
(1) Urology Department, Tenon Hospital, APHP, Paris | (1) Urology Department, Tenon Hospital, APHP, Paris | ||
| − | (2) Urology Department, Hôpital Européen Georges Pompidou, APHP, Paris | + | <br> |
| − | (3) PIMM lab, Arts et Métiers Paris Tech, Paris | + | (2) Urology Department, Hôpital Européen Georges Pompidou, APHP, Paris" |
| + | <br> | ||
| + | (3) PIMM lab, Arts et Métiers Paris Tech, Paris | ||
Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email><br> | Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email><br> | ||
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Below, we describe the Instructions Guide to use KidneyStoneCalculator: | Below, we describe the Instructions Guide to use KidneyStoneCalculator: | ||
| − | # Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager” | + | #Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager” |
| − | # Import DICOM data from a CT-scan (better with non-enhanced series) | + | #Import DICOM data from a CT-scan (better with non-enhanced series) |
| − | # Open “Crop Volume” module | + | #Open “Crop Volume” module |
| − | #* “Create a new annotation ROI” (Region Of Interest) | + | #*“Create a new annotation ROI” (Region Of Interest) |
| − | #* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition. | + | #*Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition. |
| − | #* Create a new volume (name will be: “name cropped”) | + | #*Create a new volume (name will be: “name cropped”) |
| − | #* Click “Apply” button | + | #*Click “Apply” button |
| − | # Open “KidneyStoneCalculator” module: | + | #Open “KidneyStoneCalculator” module: |
| − | #* Select volume: “name cropped” | + | #*Select volume: “name cropped” |
| − | #* Choose threshold (houndfields units) minimum and maximun to fit to the stone | + | #*Choose threshold (houndfields units) minimum and maximun to fit to the stone |
| − | #* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels | + | #*If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels |
| − | #* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type) | + | #*Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type) |
| − | #* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s) | + | #*Select “show 3D” if you want to visualize in 3D-view the segmented stone(s) |
| − | #* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min) | + | #*Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min) |
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Revision as of 16:26, 14 November 2019
Home < Documentation < Nightly < Modules < KidneyStoneCalculator
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> License: Slicer License |
Module Description
| “KidneyStoneCalculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs. |
Use Cases
N/A
Tutorials
Below, we describe the Instructions Guide to use KidneyStoneCalculator:
- Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager”
- Import DICOM data from a CT-scan (better with non-enhanced series)
- Open “Crop Volume” module
- “Create a new annotation ROI” (Region Of Interest)
- Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
- Create a new volume (name will be: “name cropped”)
- Click “Apply” button
- Open “KidneyStoneCalculator” module:
- Select volume: “name cropped”
- Choose threshold (houndfields units) minimum and maximun to fit to the stone
- If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
- Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
- Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
- Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)
Panels and their use
N/A
Similar Modules
N/A
References
N/A
Information for Developers
 |
Section under construction. |
