Documentation/Nightly/Modules/TractographyDICOMSave

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Introduction and Acknowledgements

Title: Tractography DICOM Save Author(s)/Contributor(s): Isaiah Norton (BWH) License: 3D Slicer Contribution and Software License Agreement Acknowledgements: This work is funded by the National Institutes of Health through the National Cancer Institute Information Technology for Cancer Research program, Grant CA199459 Contact: <email>slicer-users@bwh.harvard.edu</email> Website: http://slicerdmri.github.io/

SlicerDMRI   Surgical Planning Laboratory   NAC

Module Description

Utility for conversion of Slicer-style VTK tractography to DICOM TrackSet.

Use Cases

Most frequently used for these scenarios:

• Use Case 1: Load DICOM format tractography files into 3D Slicer.

Tutorials

Links to tutorials that use this module

Panels and their use

Parameters:

• IO: Input/output parameters
  • Fiber Bundle (vtk_fiberbundle): Input FiberBundle/VTK for conversion to DICOM TrackSet
  • Reference DICOM File (reference_dicom): Reference diffusion-weighted DICOM Files to associate with TrackSet.
  • Output Directory (output_directory): Output DICOM TrackSet Directory
  • Output Filename (output_filename): Output DICOM TrackSet File
• Advanced:
  • RAS to LPS (RAS_to_LPS): Change coordinate system from RAS (Slicer) to LPS (DICOM)
  • Algorithm Family (AlgorithmFamily): Supplement 181: MR Diffusion Tractography Algorithm Family
  • Laterality (Laterality): Track set laterality
  • Algorithm Name (AlgorithmName): Algorithm name
  • Algorithm Version (AlgorithmVersion): Algorithm version

List of parameters generated transforming this XML file using this XSL file. To update the URL of the XML file, edit this page.

Similar Modules

• TractographyDICOMLoad: https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/TractographyDICOMLoad

References

• http://slicerdmri.github.io/

Information for Developers

• https://github.com/SlicerDMRI
• The CLI module is called: VTK_to_DICOMTract