Difference between revisions of "Documentation/Nightly/Extensions/DTI-Reg"
Line 36: | Line 36: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Use Cases}} | {{documentation/{{documentation/version}}/module-section|Use Cases}} | ||
+ | {| | ||
+ | |[[Image:DTI-Reg - Misaligned DTIs.png|thumb|286px|Misaligned Diffusion Tensor Images]] | ||
+ | |[[Image:DTI-Reg - Aligned DTIs - Coronal.png|thumb|700px|Aligned DTIs]] | ||
+ | |} | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Tutorials}} | {{documentation/{{documentation/version}}/module-section|Tutorials}} | ||
Line 51: | Line 55: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Similar Modules}} | {{documentation/{{documentation/version}}/module-section|Similar Modules}} | ||
+ | See [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] and [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]]. | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> |
Revision as of 20:53, 15 June 2015
Home < Documentation < Nightly < Extensions < DTI-Reg
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
Extension: DTI-Reg | |||||||||
|
Module Description
DTI-Reg is an extension that performs pair-wise DTI registration, using scalar FA map to drive the registration.
Individual steps of the pair-wise registration pipeline are performed via external applications - some of them being 3D Slicer modules. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit/BRAINSDemonWarp or ANTS -Advanced Normalization Tools-, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via ResampleDTI.
Use Cases
Tutorials
A tutorial can be found here
Panels and their use
Similar Modules
See ResampleDTIlogEuclidean and DTIAtlasBuilder.
References
Information for Developers
The source code of DTI-Reg is available on GitHub. It is published under an Apache License v2.0.