Difference between revisions of "Documentation/Nightly/Extensions/FinslerTractography"
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| − | + | Supported by grant number FMECD-2010/71131616E from the Spanish Ministry of Education/Fulbright Committee <br> | |
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| − | + | This module implements the Finsler tractography method with HARDI data described by J. Melonakos et al. From a set of seeding and target points, the paths are estimated as the shortest path taking into account a local, directional dependent cost. | |
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| + | The output provided is the connectivity map from each voxel in the volume to the seeding points, plus a vector volume with the directions tangent to the fiber bundles at each point. If the Backtracing module within is built, these directions can be traced back to actually compute the fiber bundles | ||
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Revision as of 15:46, 2 May 2014
Home < Documentation < Nightly < Extensions < FinslerTractography
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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Acknowledgments:
Supported by grant number FMECD-2010/71131616E from the Spanish Ministry of Education/Fulbright Committee | |||
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Extension Description
This module implements the Finsler tractography method with HARDI data described by J. Melonakos et al. From a set of seeding and target points, the paths are estimated as the shortest path taking into account a local, directional dependent cost.
The output provided is the connectivity map from each voxel in the volume to the seeding points, plus a vector volume with the directions tangent to the fiber bundles at each point. If the Backtracing module within is built, these directions can be traced back to actually compute the fiber bundles
Modules
- Plastimatch Automatic deformable image registration
- Plastimatch DICOM-RT import
- Plastimatch LANDWARP Landmark
Use Cases
Sample data to use with modules.
DICOM-RT Structure Set
DICOM-RT Dose
Before Registration
After Registration
Before Registration
After Registration
Tutorials
Similar Extensions
N/A
References
- G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
- V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
- Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
- G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
- N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
Information for Developers
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Section under construction. |
