Slicer4:VisualBlog

This is the Slicer 4 visual blog. Please click here if you are looking for the old Slicer 3 visual blog.

• 2013
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  Some applications of the SlicerIGT extension for image-guided and navigated medical interventions. For more information see www.slicerigt.org.

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  UKFTractography is a module for computing tractography of DWI images using an unscented Kalman filter. Because of its 2-tensor algorithm, it is able to model fiber crossings and capture many more fibers than a single tensor algorithm.

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  ShapePopulationViewer is an external tool that allows the user to dynamically interact with multiple surfaces at the same time : an interesting tool for shape visualisation and comparison. It now is available as a Slicer Extension.

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  The Subject hierarchy module and mechanism organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.

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  The Data Store allows a user to easily upload and download MRB files.

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  The Contours module manages contours in the RT extension package.

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  MultiVolumeExplorer module has been updated to include the capability to plot multivolume pixel values from 2 multivolumes at the same time. This feature is particularly helpful while visualizing the results of model fits, such as those produced by the updated PkModeling extension.

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  A new extension allows to run matlab scripts without having to recompile Slicer. For more information see here

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  Extension Manager, the slicer multiplatform Appstore is open for business and free.

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  Semi-automatic lobe segmentation for regional lung disease analysis as part of the Chest Imaging Platform funded by NHLBI 1R01HL116931

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  The Cardiac MR Extension provides tools for segmentation and analysis of heart tissue and structure for treatment and diagnosis of Atrial Fibrillation.

• 2012
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  A box plot

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  Fetal brain development. The visualization is using volume rendering and the Multivolume modules in Slicer 4. Click here for the full movie (~24mb). Data downloaded from Imperial College.

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  Leveraging multi viewer layout to arrange 6 slices in the 3D viewer

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  Visualization of complex query "motor system + mass + straight gyrus" using the faceted query module

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  Fibers colored by their mean orientation is now available in the Tractography Display module

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  SlicerRT 0.2 has been released! SlicerRT is 3D Slicer with extensions for radiotherapy research, which is developed by SparKit project with the contributions from Slicer community.

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  The new extension manager

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  Up to date download statistics

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  A combination of ROI cropping of streamlines, fiducial based seeding and labelmap seeding allows to assess the deformation of streamlines which are due to tumor based deformations.

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  New download page which highlights the operating system of the downloading system.

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  New look for the Welcome module and the "Load/Save" toolbar

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  Step one of the DWI to Full-brain tractography wizard

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  Improved 2-stage user interface for the Slice Viewer Controllers

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  Updated Dicom Module

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  Updated Icons for the Core Modules

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  Updated CompareViewers and Viewer Controler Module

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  MultiVolumeExplorer with support for charting. See here for more information.

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  Label Statistics with charting and visualization

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  Image Quantification with Label Statistics, Charting, and Volume Rendering

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  Frame from a movie of slicer code activity in 2011. See the full movie here. Made with gource. Inspired by a an ITKv4 gource movie

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  A ChartView using QWebView and jqPlot with plots defined in MRML

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  A ChartView using QWebView and jqPlot with plots defined in MRML

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  A bar chart tie MRML to a QWebView

• 2011
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  Compareviewers

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  ChangeTracker visualization of analysis results

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  Sceneview Module

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  Dicom widget

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  Endoscopy module

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  Volumerendering of a CT angiogram

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  Volumerendering of a subvolume of a post Gadolinium T1 weighted image of a GBM. Note the relation of surrounding vessels to the tumor.

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  Note the deformation of the corpus callosum fibers

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  Using an ROI to crop streamlines from a whole brain tractography. The streamlines display color by orientation, the ellipsoids are displaying fractional anisotropy.

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  Annotation module 2011-11

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  Main Gui with pop-up slice controllers

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  The Data Probe

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  Models organized in a hierarchy

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  New Look Oct 2011

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  Dual camera, dual 3D viewer

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  After the facelift for the GUI

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  New models module appearance

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  Slicer4 with Volume Rendering

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  Slicer4 Annotation Module

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  Glyph display on cross-sections

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  First CompareView in Slicer4 2011

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  Slicer 4 Annotation Module 2011-01-24

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  Slicer 4 Annotation Module 2011-01-24

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  Slicer 4 Live ultrasound module for IGT spine procedures

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  Slicer 4 Live ultrasound module for IGT prostate procedures

• 2010
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  Slicer 4 Annotation Module

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  Slicer with Qt only

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  ROI Module