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| | ===Module Description=== | | ===Module Description=== |
| | * <span style="color:blue">'''''Input Parameters'''''</span>: | | * <span style="color:blue">'''''Input Parameters'''''</span>: |
| − | ** <span style="color:green">'''Baseline Scan (fixed)'''</span> [<span style="color:orange">-f --fixedVolume</span>] : The fixed scan image for registration. | + | ** <span style="color:green">'''Size'''</span> [<span style="color:orange">-s --spacing</span>] : The value of each voxel resolution for 3 dimensions |
| − | ** <span style="color:green">'''Follow up Scan (moving)'''</span> [<span style="color:orange">-m --movingVolume</span>] : The moving scan image for registration. | + | ** <span style="color:green">'''Input Volume'''</span> [<span style="color:orange">index: 0</span>] : Input volume to be resampled. |
| − | ** <span style="color:green">'''Baseline Segmentation (fixed)'''</span> [<span style="color:orange">--fixedBinaryVolume</span>] : The fixed one label segmentation image for registration used to specify the region of interest.
| + | ** <span style="color:green">'''Output Volume'''</span> [<span style="color:orange">index: 1</span>] : Resampled Output Volume |
| − | ** <span style="color:green">'''Follow up Segmentation (moving)'''</span> [<span style="color:orange">--movingBinaryVolume</span>] : The moving one label segmentation image for registration used to specify the region of interest. | |
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| − | * <span style="color:blue">'''''Voxel Based Registration Options'''''</span>:
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| − | ** <span style="color:green">'''Rigid + Scale (7DOF)'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
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| − | ** <span style="color:green">'''Rigid + Skew + Scale (10DOF)'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
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| − | ** <span style="color:green">'''Affine (12DOF)'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps.
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| − | * <span style="color:blue">'''''Output Registration Matrix'''''</span>:
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| − | ** <span style="color:green">'''Registration Matrix'''</span> [<span style="color:orange">-t --transformPath</span>] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.
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| − | * <span style="color:blue">'''''Apply Registration Matrix'''''</span>:
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| − | ** <span style="color:green">'''Input Segmentatiton to be Registered'''</span> [<span style="color:orange">--segmentation</span>] : Input segmentation image to be modified with the registration matrix.
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| − | ** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--segmentationOut</span>] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
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| − | ** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.
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| | [[Image:DownsizeInterface.png|thumb|280px|User Interface]] | | [[Image:DownsizeInterface.png|thumb|280px|User Interface]] |
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 Input Scan Bad Voxel Based Resolution |
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General Information
Module Type & Category
Type: CLI
Category: CBCT Scan Registration pre steps
Authors, Collaborators & Contact
Author: Vinicius Boen
Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)
Contact: vboen@umich.edu
Module Description
- Input Parameters:
- Size [-s --spacing] : The value of each voxel resolution for 3 dimensions
- Input Volume [index: 0] : Input volume to be resampled.
- Output Volume [index: 1] : Resampled Output Volume
