Difference between revisions of "Documentation/4.0/SlicerApplication/LookupTables"
From Slicer Wiki
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file:GenericLabel-LUTs-2012-02-18.png|Generic Labelmap Luts | file:GenericLabel-LUTs-2012-02-18.png|Generic Labelmap Luts | ||
</gallery> | </gallery> | ||
| + | |||
| + | ===Generic LUTs=== | ||
| + | *[[Slicer3:2010_GenericAnatomyColors|GenericAnatomyColors.txt: Default LUT for Slicer {{documentation/version}}]] | ||
| + | *[[Slicer3:GenericColors.txt|GenericColors.txt: Generic Colors LUT for Slicer {{documentation/version}}]] | ||
| + | *Preparation work | ||
| + | **[[Slicer3:2010_Illustration_Style_Colorfile|2010 Color lookup table with colors chosen based in part on traditional anatomic atlases]]. | ||
| + | **[[Slicer3:2010_Default_Color_Preview|development samples of new colors for 2010 default lut]] | ||
| + | |||
| + | ===Custom LUTs=== | ||
| + | *[[Slicer3:2010_Label_Colors|2010 Colors for a generic labelmap]] | ||
| + | *[[Slicer3:2010_Brain_Labels|2010 Label colors for brain segmentation]] | ||
| + | *[[Slicer3:Freesurfer_labels|Freesurfer labels]] | ||
| + | *[[Slicer3:Mori-Atlas_labels|Mori-Atlas labels]] | ||
| + | *[[Slicer3:Lauras_labels|Lauras labels]] | ||
| + | |||
| + | ===Brain Atlas LUTs=== | ||
| + | *[[CCA:Atlases:MRI_Brain_Atlas_2010:ColorFile|2010 Brain Atlas]] (Good example of the wiki-based labelpage format, including multiple tables.) | ||
| + | |||
| + | ===LUTs for Charting=== | ||
| + | Please see the [[Slicer4:2012_GenericChartColors|separate page]] | ||
=Slicer ColorPicker= | =Slicer ColorPicker= | ||
[[Image:SlicerColorPicker-2012-02-18.png|300px|right|thumb|The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines]] | [[Image:SlicerColorPicker-2012-02-18.png|300px|right|thumb|The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines]] | ||
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=Custom LUTs= | =Custom LUTs= | ||
Revision as of 18:30, 18 February 2012
Home < Documentation < 4.0 < SlicerApplication < LookupTables
Overview
Slicer offers a variety of predefined lookup tables (LUT).
LUTs
Discrete Luts
Shade Luts
Tint Luts
Freesurfer Luts
PET Luts
Cartilage MRI Luts
Labelmap Luts
Generic Labelmap Luts
Generic LUTs
- GenericAnatomyColors.txt: Default LUT for Slicer 4.0
- GenericColors.txt: Generic Colors LUT for Slicer 4.0
- Preparation work
Custom LUTs
- 2010 Colors for a generic labelmap
- 2010 Label colors for brain segmentation
- Freesurfer labels
- Mori-Atlas labels
- Lauras labels
Brain Atlas LUTs
- 2010 Brain Atlas (Good example of the wiki-based labelpage format, including multiple tables.)
LUTs for Charting
Please see the separate page
Slicer ColorPicker
Custom LUTs
It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example.
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgba(0,0,0,0) | |
| 1 | tissue | rgb(128,174,128) | Default label for bodily tissues |
| 2 | bone | rgb(241,214,145) | |
| 3 | skin | rgb(177,122,101) | |
| 4 | connective tissue | rgb(111,184,210) |
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- A custom LUT can be loaded into Slicer like any other file.
