Difference between revisions of "Main Page"
From Slicer Wiki
| Line 29: | Line 29: | ||
=News= | =News= | ||
==2011== | ==2011== | ||
| − | + | ===March=== | |
| − | + | * 4th: New [[Slicer3:3.6_Final_Issues#DONE:_Issues_fixed_for_inclusion_in_Slicer_3.6.3_--_included_in_release_builds_of_March_4.2C_2011 |Slicer3.6.3 Patch Release]] | |
[[image:Slicer3-6Announcement-v2.png|align='right"|thumb|250px|Slicer3.6.3 Patch Released on March 4th, 2011.]] | [[image:Slicer3-6Announcement-v2.png|align='right"|thumb|250px|Slicer3.6.3 Patch Released on March 4th, 2011.]] | ||
| − | + | ===February=== | |
| − | + | * A very productive [http://www.commontk.org/index.php/CTK-Hackfest-Feb-2011 CTK Hackfest] made significant progress on new dicom interoperability features that will be a key part of slicer4. | |
| − | + | ===January=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/AHM_2011 NA-MIC all hands meeting (AHM)] | |
==2010== | ==2010== | ||
| − | + | ===October=== | |
| − | + | *Our friends and colleagues at UFP in Barcelona, Spain have [http://www.gimias.org/index.php?option=com_content&view=article&id=78&Itemid=56 released version 1.2 of the Gimias application]. This new version includes an interface so that Gimias can discover and execute slicer command line modules to operate on data loaded in Gimias. | |
| − | + | ===September=== | |
| − | + | *The first alpha versions of Slicer4 (the Qt version) are starting to become available. Contact the slicer-devel list if you want access to a binary installer for testing. | |
| − | + | *A video has been nominated for [http://www.youtube.com/watch?v=_Uitqpv_thk official slicer bug fixing anthem] ;) | |
| − | + | ===August=== | |
| − | + | *The Slicer 3.6.1 patch release includes several bug fixes and other improvements. A 3.6.2 is in the works for sometime in the next few weeks to capture more bug fixes. See [[Slicer3:3.6_Final_Issues|the list of fixed and outstanding issues for Slicer 3.6.x]]. | |
| − | + | ===July=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/2010-Slicer-StLouis Slicer training event in St. Louis] | |
| − | + | ===June=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/2010_Summer_Project_Week 11th NA-MIC Summer Project Week] | |
| − | + | *[[Announcements:Slicer3.6|Slicer 3.6 released]] | |
[[image:Slicer3-6Announcement-v2.png|align='right"|thumb|250px|Slicer 3.6 Released in June 2010.]] | [[image:Slicer3-6Announcement-v2.png|align='right"|thumb|250px|Slicer 3.6 Released in June 2010.]] | ||
| − | + | ===May=== | |
| − | + | *first (5/17) and second (5/25) release candidates for Slicer 3.6 | |
| − | + | ===April=== | |
| − | + | *[http://www.ohloh.net/p/3376/factoids Slicer factoids] on Ohloh | |
| − | + | *Feature Freeze month! Developers are working on bug fixes, documentation, and performance enhancement. | |
| − | + | *Check out [http://picasaweb.google.com/107065747472066371420 Andras Jakab's impressive surgery planning images] | |
| − | + | ===March=== | |
| − | + | *New infrastructure software is rapidly evolving in the context of the [http://www.na-mic.org/Wiki/index.php/Events:CTK-Pre-Hackfest-2010 Common Toolkit working meetings]. | |
| − | + | *Planning underway for [[Slicer3:3.6Release|release 3.6 of 3D Slicer]] | |
| − | + | *[http://www.medfloss.org/node/263 A slicer review on medfloss] | |
| − | + | *[http://packages.debian.org/search?keywords=slicer&searchon=names&exact=1&suite=all§ion=all slicer's debian package page] | |
| − | + | *[https://launchpad.net/ubuntu/+source/slicer/ slicer ubuntu package] that can be installed with the [http://www.ubuntu.com/testing/lucid/alpha3 alpha version of Ubuntu 10.04] | |
| − | + | *A [[Slicer3:Debian | page with information about installing slicer3 on Debian]] has been started. | |
| − | + | *We are starting to make plans for [[Slicer4|3D Slicer version 4 (also known as Slicer4)]]. A big step! | |
| − | + | ===January=== | |
| − | + | *[http://wiki.na-mic.org/Wiki/index.php/2010_Winter_Project_Week 10th project week] | |
==2009== | ==2009== | ||
| − | + | ===December=== | |
| − | + | *Lots of activity around the [[Slicer3:Developers:Projects:QtSlicer| Port of Slicer to Qt]] | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/Dec-2009-SlicerAIMBrainstorming New Annotation Tools are in the works] | |
| − | + | ===November=== | |
| − | + | *Seb Barre from Kitware has taken the lead in [[Slicer3:Multiple Cameras|adding multiple cameras]] support to Slicer 3. The work is currently focused on multiple cameras and multiple views, but only one scene. The nightly build contains a new module, called cameras. Jim Miller has added a new layout, called Dual 3D Layout. [[Image:Dual 3D View.png|thumb|200px|Dual 3D layout]]. | |
| − | + | ===October=== | |
| − | + | *Test of [http://wiki.slicer.org/slicerWiki/index.php?title=Main_Page&useskin=chick mobile friendly wiki skin] | |
| − | + | ===September=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/Sept-2009-SlicerWidgetsBrainstorm Serious work is beginning] on a [[Qt_in_Slicer3|Slicer3 port to Qt]]. | |
| − | + | *Attila Nagy and his colleagues created a [http://www.orl.szote.u-szeged.hu/~attila/presentations.html very nice set of presentations and animations] with slicer to illustrate 3D reconstruction as applied to otorhinolaryngology. (See [[Nagy-videos-2009:Notes|Notes]]). | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ===August=== | |
| − | + | *New images in [[Slicer3:VisualBlog|the visual blog]] show integration of slicer and [http://www.bioimagesuite.org BioImageSuite]. | |
| − | + | ===July=== | |
| − | + | *Several bug fixes are being rolled into a 3.4.1 patch release, expected for beginning of August | |
| − | + | ===June=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/2009_Summer_Project_Week NA-MIC Summer Project Week] was a great success! | |
| − | + | *New documentation is available, thanks to the [http://www.na-mic.org/Wiki/index.php/Events:TutorialContestJune2009 Summer 2009 Tutorial Contest] | |
| − | + | ===May=== | |
| − | + | *[[Announcements:Slicer3.4|Slicer 3.4 release]] | |
| − | + | *The [http://viewvc.slicer.org/branches/Slicer-3-4/ 3.4 release branch has been created in subversion] | |
| − | + | *[http://tinyurl.com/cu9bzp A punch list of 3.4 bugs] is being maintained on the Mantis Bug Tracker. | |
| − | + | ===March=== | |
| − | + | *Development of slicer3.4 is still under way. To check the status, go to the bug tracker and search for the tag "3.4 Targeted fix". Our plan is to fix anything with that tag before branching the release. http://na-mic.org/Mantis/main_page.php The svn trunk for slicer3 is still in "feature freeze" mode, meaning that only fixes should be checked in. Any new development should occur in svn branches for now. | |
| − | + | *Developers, please be sure to apply the "3.4 Targeted fix" to anything you are working on for the release. | |
| − | + | ===January=== | |
| + | *A product release of Slicer 3.4 is scheduled for Feb/March | ||
| + | *There will be a code freeze on Feb 4, 2009 | ||
| + | *Slicer3 and related research project were highlighted and demoed as part of the External Advisory Board meeting of the [http://nac.spl.harvard.edu Neuroimage Analysis Center]. | ||
==2008== | ==2008== | ||
| − | + | ===December=== | |
| − | + | *Andrew Farke posted [http://openpaleo.blogspot.com/2008/12/3d-slicer-tutorial-part-iv.html some excellent tutorials] on the use of 3D Slicer in paleontology research. | |
| − | + | *A training course on [http://www.na-mic.org/Wiki/index.php/Events:RSNA2008 use of 3D Slicer by Radiologists] was held at [http://rsna2008.rsna.org/ RSNA] in Chicago. | |
| − | + | *[http://www.ncigt.org NCIGT] is hosting a [http://www.na-mic.org/Wiki/index.php/2008_IGT_Project_Week Project Week] for developing Image Guided Therapy software that features many slicer projects. | |
| − | + | ===September=== | |
| − | + | *Andras Jakab won second place in [http://www.kitware.com/viscontest/medicalviswinner.html Kitware's medical image visualization contest!]. The image combines slice viewing, models, volume rendering, and tractography applied to a gamma knife neurooncology radiotherapy planning case. Andras used slicer's registration tools to fuse CT and diffusion MR into a multimodal scene. | |
[[Image:Andras-Jakab-brainconnectivity.png|thumb|200px|Andras Jakab's award winning slicer image.]] | [[Image:Andras-Jakab-brainconnectivity.png|thumb|200px|Andras Jakab's award winning slicer image.]] | ||
| − | + | *[http://www.na-mic.org/Wiki/index.php/Miccai_2008_Tutorial A NA-MIC Workshop at MICCAI] addressed the creation of ITK-based command line modules for 3D Slicer. | |
| − | + | *Slicer user Attila Nagy presented on Slicer3 for inner ear imaging ([http://www.orl.szote.u-szeged.hu/~attila/NagyA-2008-Miskolc.ppt Slides - Hungarian]) | |
| − | + | *Attila also provided patches to build Slicer3 and most of Slicer2 using the latest versions of Solaris and the optimized Sun C++ compilers. | |
| − | + | ===August=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/Events:August_2008_NCBC_AHM August 14, 2008: NCBC 2008 Science Fair "Three ways of using the NA-MIC Kit" ] | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/Events:NCI_Workshop_August_2008 August 15, 2008: NCI Workshop - August 15, 2008 ] | |
[[Image:NITRC logo Listed.jpg|thumb|200px|http://www.nitrc.org/projects/slicer/]] | [[Image:NITRC logo Listed.jpg|thumb|200px|http://www.nitrc.org/projects/slicer/]] | ||
| − | + | ===July=== | |
| − | + | *[http://www.airwayinspector.org Airway Inspector] is a powerful tool for lung image analysis build on slicer2. A port to slicer3 is getting under way in the next few weeks and is expected to take about 6 months. | |
| − | + | *Slicer and the NA-MIC software environment were presented as part of the [https://www.ipam.ucla.edu/schedule.aspx?pc=mbi2008 UCLA Institute for Pure and Applied Mathematics Summer School on Mathematics and Brain Imaging]. | |
| − | + | *A [http://www.na-mic.org/Wiki/index.php/2008_July_Slicer_IGT_VV_Link_Session_II very productive working meeting] between researchers at BWH and Yale resulted in successful connection of Slicer3 to the BrainLab commercial image guided neurosurgery system. | |
| − | + | ===June=== | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/2008_June_Workshop_Germany June 16-17, 2008: Training Event in Germany] | |
| − | + | *[http://www.na-mic.org/Wiki/index.php/2008_Summer_Project_Week June 23-27, 2008, NA-MIC Summer Project Week] | |
| − | + | ===May=== | |
| − | + | *[[Announcements:Slicer3.2|Slicer 3.2 release]] | |
| − | + | *Slicer3 included in review paper on [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2039808 "Rapid Development of Medical Imaging Tools with Open Source Libraries"] | |
| − | + | ===April=== | |
| − | + | *[http://www.ohloh.net/p/3376/factoids Slicer rated in the top 2% of project teams in Ohloh] | |
| − | + | *[[Slicer3:Slicer3_Workshop_UNC_Chapel_Hill_2008| April 14, 2008: Slicer 3 User and Developer Workshop, UNC Chapel Hill]] | |
| − | + | ===March=== | |
| − | + | *A new [http://en.wikipedia.org/wiki/3DSlicer 3D Slicer Wikipedia entry] has been created. | |
| − | + | ===February=== | |
| − | + | *February 20th, 2008, [[Slicer3:Spring-2008-User-Training| Spring 2008 Slicer3 User Training Workshop ]] in the SPL at 1249 Boylston St. Boston. | |
| − | + | ===January=== | |
| − | + | *[[tutorialwishlist|Wishlist for tutorials]] | |
| − | + | *Lots of Slicer development activity as part of ===[http://www.na-mic.org/Wiki/index.php/AHM_2008 NA-MIC All Hands Meeting] and [http://www.na-mic.org/Wiki/index.php/2008_Winter_Project_Week Winter Project Week] | |
==2007== | ==2007== | ||
| − | + | ===December=== | |
| − | + | *A three-day retreat for [http://www.na-mic.org/Wiki/index.php/2007_December_Slicer_IGT_Programming Slicer in Image Guided Therapy] was held in Boston. | |
| − | + | ===November=== | |
| − | + | *New builds are now available for [http://www.slicer.org/DownloadSlicer.php/Snapshots/linux-x86_64/Slicer3-3.0.2007-11-21-linux-x86_64.sh Linux 64], [http://www.slicer.org/DownloadSlicer.php/Snapshots/linux-x86/Slicer3-3.0.2007-11-21-linux-x86.sh Linux 32], [http://www.slicer.org/DownloadSlicer.php/Snapshots/win32/Slicer3-3.0.2007-11-19-win32.exe Windows], [http://www.slicer.org/DownloadSlicer.php/Snapshots/darwin-ppc/Slicer3-3.0.2007-11-19-darwin-ppc.sh Darwin PPC], and [http://www.slicer.org/DownloadSlicer.php/Snapshots/darwin-x86/Slicer3-3.0.2007-11-19-darwin-x86.sh Darwin x86] | |
| − | + | ===June=== | |
| − | + | *Lots of Slicer3 work at [http://wiki.na-mic.org/Wiki/index.php/Engineering:Programming_Events the NA-MIC Summer Project Week] | |
| − | + | ===March=== | |
| − | + | *New Image Guided Therapy (IGT) functionality for tracking surgical instruments added by developers working at the [http://www.ncigt.org National Center for IGT]. | |
| − | + | ===February=== | |
| − | + | *February 7-8, 2007. [[Slicer3:MiniRetreat February 7-8, 2007| Slicer3 Mini-Retreat, Boston]] | |
| − | + | *Resulted in the implementation of a [[Slicer3::Python | Python interface]] to Slicer3. | |
| − | + | ===January=== | |
| − | + | *Slicer3 developers are getting together in Salt Lake City for a "programming half-week" as part of the [http://wiki.na-mic.org/Wiki/index.php/AHM_2007 NA-MIC All-Hands Meeting] | |
| − | + | *[[Slicer3:Developers#Information_for_Developers| Lots of new developer documentation added!]] | |
| − | + | *Slicer3 beta released | |
| − | + | *[http://na-mic.org/Mantis/main_page.php New bug tracker installed] | |
==2006== | ==2006== | ||
| − | + | ===December=== | |
| − | + | *There was a big meltdown of the na-mic.org server in December, and some things were lost including wiki history, slicer3 bug tracker and doxygen, and some of the older download files. Please bear with us as we pick ourselves up and carry on. | |
| − | + | ===November=== | |
| − | + | *[[Slicer3_Alpha_builds| Slicer3 Alpha builds]] available for Linux (32 and 64 bit) and windows! | |
| − | + | ===October=== | |
| − | + | *Slicer3 development version shown at the [http://www.nbirn.net/press/current/ahm2006.shtm BIRN All Hands Meeting] as the platform for the BIRN Query Atlas Project and overall visualization issue in BIRN. See [[Media:BIRNFIPS2Slicer3-2006-10-24.ppt| these slides for more information]]. | |
| − | + | ===September=== | |
| − | + | *[http://wiki.na-mic.org/Wiki/index.php/2006_September_Slicer3_Update Development meeting at BWH September 19, 20.] | |
| − | + | ===July=== | |
| − | + | *There was active development of Slicer3 at and around the [http://wiki.na-mic.org/Wiki/index.php/2006_Programming/Project_Week_MIT NA-MIC Summer Project Week]. | |
| − | + | *New Slicer3 wiki page organization is under way. Please send feedback to the [mailto:slicer-devel@massmail.spl.harvard.edu slicer-developers mailing list]. | |
<br> | <br> | ||
---- | ---- | ||
Revision as of 16:39, 17 August 2011
Contents
Welcome to the 3D Slicer Wiki pages!
Welcome to the Slicer Wiki Home Page.
How to use this site:
- The Slicer Web pages provide a guided tour to the application, training materials, and the development community. New users should start there because we try to keep it organized and up to date.
- These wiki pages are more free-form, with notes and reference pages that help support developers and users across multiple sites. You will find good information on the wiki, but it's possible that it's out of date or describes features that are still in the planning phase.
Slicer 4 Annotation Module 2011-01-24
Slicer 4 Annotation Module
A set of slicer command line modules are now shipped as part of the Gimias tool from UPF in Barcelona!
In this screenshot CompareView layout of 3D Slicer is used to facilitate visualization of multiparametric MRI of the prostate
More images at the Slicer3 Visual Blog... Slicer4 Visual Blog...
3D Slicer is:
- A software platform for the analysis and visualization of medical images and for research in image guided therapy.
- An algorithm and application development platform with a powerful plug-in architecture.
- A free, open source package available on multiple operating systems (Windows, MAC, Linux).
News
2011
March
- 4th: New Slicer3.6.3 Patch Release
February
- A very productive CTK Hackfest made significant progress on new dicom interoperability features that will be a key part of slicer4.
January
2010
October
- Our friends and colleagues at UFP in Barcelona, Spain have released version 1.2 of the Gimias application. This new version includes an interface so that Gimias can discover and execute slicer command line modules to operate on data loaded in Gimias.
September
- The first alpha versions of Slicer4 (the Qt version) are starting to become available. Contact the slicer-devel list if you want access to a binary installer for testing.
- A video has been nominated for official slicer bug fixing anthem ;)
August
- The Slicer 3.6.1 patch release includes several bug fixes and other improvements. A 3.6.2 is in the works for sometime in the next few weeks to capture more bug fixes. See the list of fixed and outstanding issues for Slicer 3.6.x.
July
June
May
- first (5/17) and second (5/25) release candidates for Slicer 3.6
April
- Slicer factoids on Ohloh
- Feature Freeze month! Developers are working on bug fixes, documentation, and performance enhancement.
- Check out Andras Jakab's impressive surgery planning images
March
- New infrastructure software is rapidly evolving in the context of the Common Toolkit working meetings.
- Planning underway for release 3.6 of 3D Slicer
- A slicer review on medfloss
- slicer's debian package page
- slicer ubuntu package that can be installed with the alpha version of Ubuntu 10.04
- A page with information about installing slicer3 on Debian has been started.
- We are starting to make plans for 3D Slicer version 4 (also known as Slicer4). A big step!
January
2009
December
- Lots of activity around the Port of Slicer to Qt
- New Annotation Tools are in the works
November
- Seb Barre from Kitware has taken the lead in adding multiple cameras support to Slicer 3. The work is currently focused on multiple cameras and multiple views, but only one scene. The nightly build contains a new module, called cameras. Jim Miller has added a new layout, called Dual 3D Layout. .
October
- Test of mobile friendly wiki skin
September
- Serious work is beginning on a Slicer3 port to Qt.
- Attila Nagy and his colleagues created a very nice set of presentations and animations with slicer to illustrate 3D reconstruction as applied to otorhinolaryngology. (See Notes).
August
- New images in the visual blog show integration of slicer and BioImageSuite.
July
- Several bug fixes are being rolled into a 3.4.1 patch release, expected for beginning of August
June
- NA-MIC Summer Project Week was a great success!
- New documentation is available, thanks to the Summer 2009 Tutorial Contest
May
- Slicer 3.4 release
- The 3.4 release branch has been created in subversion
- A punch list of 3.4 bugs is being maintained on the Mantis Bug Tracker.
March
- Development of slicer3.4 is still under way. To check the status, go to the bug tracker and search for the tag "3.4 Targeted fix". Our plan is to fix anything with that tag before branching the release. http://na-mic.org/Mantis/main_page.php The svn trunk for slicer3 is still in "feature freeze" mode, meaning that only fixes should be checked in. Any new development should occur in svn branches for now.
- Developers, please be sure to apply the "3.4 Targeted fix" to anything you are working on for the release.
January
- A product release of Slicer 3.4 is scheduled for Feb/March
- There will be a code freeze on Feb 4, 2009
- Slicer3 and related research project were highlighted and demoed as part of the External Advisory Board meeting of the Neuroimage Analysis Center.
2008
December
- Andrew Farke posted some excellent tutorials on the use of 3D Slicer in paleontology research.
- A training course on use of 3D Slicer by Radiologists was held at RSNA in Chicago.
- NCIGT is hosting a Project Week for developing Image Guided Therapy software that features many slicer projects.
September
- Andras Jakab won second place in Kitware's medical image visualization contest!. The image combines slice viewing, models, volume rendering, and tractography applied to a gamma knife neurooncology radiotherapy planning case. Andras used slicer's registration tools to fuse CT and diffusion MR into a multimodal scene.
- A NA-MIC Workshop at MICCAI addressed the creation of ITK-based command line modules for 3D Slicer.
- Slicer user Attila Nagy presented on Slicer3 for inner ear imaging (Slides - Hungarian)
- Attila also provided patches to build Slicer3 and most of Slicer2 using the latest versions of Solaris and the optimized Sun C++ compilers.
August
- August 14, 2008: NCBC 2008 Science Fair "Three ways of using the NA-MIC Kit"
- August 15, 2008: NCI Workshop - August 15, 2008
July
- Airway Inspector is a powerful tool for lung image analysis build on slicer2. A port to slicer3 is getting under way in the next few weeks and is expected to take about 6 months.
- Slicer and the NA-MIC software environment were presented as part of the UCLA Institute for Pure and Applied Mathematics Summer School on Mathematics and Brain Imaging.
- A very productive working meeting between researchers at BWH and Yale resulted in successful connection of Slicer3 to the BrainLab commercial image guided neurosurgery system.
June
May
- Slicer 3.2 release
- Slicer3 included in review paper on "Rapid Development of Medical Imaging Tools with Open Source Libraries"
April
- Slicer rated in the top 2% of project teams in Ohloh
- April 14, 2008: Slicer 3 User and Developer Workshop, UNC Chapel Hill
March
- A new 3D Slicer Wikipedia entry has been created.
February
- February 20th, 2008, Spring 2008 Slicer3 User Training Workshop in the SPL at 1249 Boylston St. Boston.
January
- Wishlist for tutorials
- Lots of Slicer development activity as part of ===NA-MIC All Hands Meeting and Winter Project Week
2007
December
- A three-day retreat for Slicer in Image Guided Therapy was held in Boston.
November
- New builds are now available for Linux 64, Linux 32, Windows, Darwin PPC, and Darwin x86
June
- Lots of Slicer3 work at the NA-MIC Summer Project Week
March
- New Image Guided Therapy (IGT) functionality for tracking surgical instruments added by developers working at the National Center for IGT.
February
- February 7-8, 2007. Slicer3 Mini-Retreat, Boston
- Resulted in the implementation of a Python interface to Slicer3.
January
- Slicer3 developers are getting together in Salt Lake City for a "programming half-week" as part of the NA-MIC All-Hands Meeting
- Lots of new developer documentation added!
- Slicer3 beta released
- New bug tracker installed
2006
December
- There was a big meltdown of the na-mic.org server in December, and some things were lost including wiki history, slicer3 bug tracker and doxygen, and some of the older download files. Please bear with us as we pick ourselves up and carry on.
November
- Slicer3 Alpha builds available for Linux (32 and 64 bit) and windows!
October
- Slicer3 development version shown at the BIRN All Hands Meeting as the platform for the BIRN Query Atlas Project and overall visualization issue in BIRN. See these slides for more information.
September
July
- There was active development of Slicer3 at and around the NA-MIC Summer Project Week.
- New Slicer3 wiki page organization is under way. Please send feedback to the slicer-developers mailing list.
For Wiki Administration
- Create user account
- Users List
- Authorized users can commit edited web pages through slicer's wiki2web interface
