Slicer3: Image Guided Therapy (IGT)

Introduction

The Slicer3 IGT tools are intended to enable research in image guided therapy. They leverage the Slicer environment and augment it with a number of IGT specific functionalities and modules. One key element of this capability is Open IGT link, a communication protocol to link 3D Slicer to a variety of devices.

Use-case scenario 1: Neurosurgical navigation

• I am a neurosurgeon who is using the BrainLabs Navigation system. I would like to use Slicer to do some research in DTI visualization during procedures. What do I do?

The following scenario is being developed and tested: The integration of BrainLab and Slicer3

Use-case scenario 2: IGT robotics tutorial with LEGO Mindstorms

• I am a professor who wants to use Slicer to educate my students about the basics of robotics in IGT

Materials

Provided by NA-MIC and the Surgical Planning Lab:

• 3D Slicer
• 3D Slicer LEGO tutorial module (available at NA-MIC SandBox Subversion Repositiory)
• CT volume of the phantom (download 000003.SER.zip)
• Tutorial slides
• Assembly instructions for the robot and the phantom
• Phantom placement guide

Provided by tutorial participants:

• 1 LEGO Mindstorms NXT kit (Available at LEGO Shop)
• 1 LEGO Deluxe Brick box (Available at LEGO Shop)
• 2 pom-poms
• Linux computer with root access or Windows with administrator privileges

(For purchasing information for user-supplied materials, see the "Tutorial Slides Part 1 - Background and Materials" slides.)

Steps

STEP 1: Assemble Robot (See Robot assembly instruction)

STEP 2: Assemble Phantom (See Phantom assembly instruction)

STEP 3: Place phantom (See Phantom assembly instruction)

For more information, please refer the tutorial slide materials listed bellow.

References

• Tutorial Slides Part 1 - Background and Materials: LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf

• Tutorial Slides Part 2 - Basic Tutorial: LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf

• Tutorial Slides Part 3 - Advanced Tutorial: LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf

• CT volume of the LEGO phantom: 000003.SER.zip

• 3D Slicer LEGO tutorial module (including code to interface between a LEGO robot and a C++ program): Available on the NA-MIC Sandbox - access online or through the NA-MIC subversion system

• MICCAI 2007 "Open Source and Open Data for MICCAI" workshop paper: Image:AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf

List of devices that have been linked successfully

• Support medical tracking systems
• All devices interfaced to IGSTK (Noby inserts link), including
  • Flashpoint (Image Guided Technologies, Boulder, CO)
  • Robin Medical
  • scanners (Noby: which ones)
  • robots (Noby which ones)

• IGT Modules in Slicer 3.3

Only what is in Slicer 3.3 nightly!

• For more information
  • IGT Tutorial Materials