Difference between revisions of "Documentation/Nightly/Extensions/3D Model Segmentation"
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− | *''' | + | == Step 1. Volume Selection == |
+ | *'''Volume Selection''': Choose which image you would like to segment. If you only select one image, steps 2 and 3 (Registration, Normalization, and Subtraction) will be skipped. | ||
+ | == Step 2. Registration (Optional) == | ||
+ | *'''Registration Order''': Choose which order you would like to register your images to. The moving image will be resampled into the space of the fixed image using Slicer's BRAINSFit registration algorithm. | ||
+ | *'''Registration Method''': Choose which registration method you would like to use. "No Registration" allows you to skip this step. "Rigid Registration" will attempt to rotate and translate the moving image into the space of the fixed image. "Affine Registration" will rotate, translate, scale, and skew the input image. Both affine and rigid registration methods will produce a 3D Slicer Linear Transformation object which you can inspect in the "Transforms" module. "Deformable Registration" will perform deformable BSpline registration on the moving image, and correspondingly create a BSpline Transform object. In general, each method will be more accurate but more time-consuming than the previous method. | ||
+ | *'''Registration Output''': Either create a new volume for the post-registration moving image, or replace the original image. The new volume will have the name "[VolumeName1]_reg_[VolumeName2]". | ||
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*'''Segmentation of the fixed image''' | *'''Segmentation of the fixed image''' | ||
*'''Moving image''' (optional): image to be registered | *'''Moving image''' (optional): image to be registered | ||
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*'''Registration deformable transform''': transform to store the result of deformable registration | *'''Registration deformable transform''': transform to store the result of deformable registration | ||
*'''Visualization''': initializes slice viewers to show overlay of the fixed and moving images (before or after registration), outline of the fixed image segmentation and the registration transform grid and visualization of the fixed and moving segmentation label surfaces in 3d view | *'''Visualization''': initializes slice viewers to show overlay of the fixed and moving images (before or after registration), outline of the fixed image segmentation and the registration transform grid and visualization of the fixed and moving segmentation label surfaces in 3d view | ||
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Revision as of 22:36, 10 July 2017
Home < Documentation < Nightly < Extensions < 3D Model Segmentation
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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Module Description
Module description here.
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Use Cases
- Tumor Segmentation
Tutorials
https://www.youtube.com/watch?v=_7oZygGp2ds&t=13s
Documentation
Step 1. Volume Selection
Step 2. Registration (Optional)
Similar ModulesVolume Clip ChangeTracker ReferencesInformation for Developers
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