Difference between revisions of "Documentation/Nightly"

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(Added core modules list, stripped down automatically generated content)
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Modules and Extensions</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Functions</span>
 
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{| width="100%" cellspacing="7" cellpadding="2"
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|- style="vertical-align:top; border-style:hidden;"
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| width="5%" |
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&nbsp;
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| width="45%" |
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[[Image:SlicerAnnotationsV2-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Annotations|Annotations]]
 +
<br/>
 +
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[[Image:DataIcon.png|32px]] [[{{FULLPAGENAME}}/Modules/Data|Data]]
 +
<br/>
 +
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[[Image:DataStoreIcon_128.png|32px]] [[{{FULLPAGENAME}}/Modules/DataStore|Data Store]]
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<br/>
 +
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[[Image:DICOM.png|32px]] [[{{FULLPAGENAME}}/Modules/DICOM|DICOM]]
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<br/>
 +
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[[Image:Editor.png|32px]] [[{{FULLPAGENAME}}/Modules/Editor|Editor]]
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<br/>
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[[Image:Markups.png|32px]] [[{{FULLPAGENAME}}/Modules/Markups|Markups]]
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<br/>
 +
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[[Image:SlicerModels-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Models|Models]]
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<br/>
 +
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[[Image:SceneViews.png|32px]] [[{{FULLPAGENAME}}/Modules/SceneViews|Scene Views]]
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<br/>
 +
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[[Image:Segmentations.png|32px]] [[{{FULLPAGENAME}}/Modules/Segmentations|Segmentations]]
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<br/>
 +
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[[Image:SegmentEditor.png|32px]] [[{{FULLPAGENAME}}/Modules/SegmentEditor|Segment Editor]]
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<br/>
 +
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[[Image:Transforms.png|32px]] [[{{FULLPAGENAME}}/Modules/Transforms|Transforms]]
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<br/>
 +
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[[Image:ViewControllersIcon.png|32px]] [[{{FULLPAGENAME}}/Modules/ViewControllers|View Controllers]]
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<br/>
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[[Image:VolumeRendering.png|32px]] [[{{FULLPAGENAME}}/Modules/VolumeRendering|Volume Rendering]]
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<br/>
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[[Image:SlicerVolume-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Volumes|Volumes]]
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<br/>
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[[Image:Welcome.png|32px]] [[{{FULLPAGENAME}}/Modules/Welcome|Welcome to Slicer]]
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<br/>
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{{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}}
 
{{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}}
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|}
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{{:{{FULLPAGENAME}}/ModuleExtensionListing}}
 
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{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
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|- style="vertical-align:top; border-style:hidden;"
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|
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{{:{{FULLPAGENAME}}/ModuleExtensionListing/Extensions_by_name}}
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|
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<br/>
 +
<br/>
 +
= Modules by category =
 +
 +
== Converters ==
 +
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Developer_Tools'></span>
 +
== Developer Tools ==
 +
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/ExecutionModelTour|ExecutionModelTour]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExtensionWizard|ExtensionWizard]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/EventBroker|EventBroker]]
 +
* DoubleArrays    <small>(loadable)</small>
 +
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 +
=== DICOM Plugins ===
 +
* DICOMParametricMapPlugin
 +
* DicomUltrasoundPlugin
 +
* DICOMSegmentationPlugin
 +
* DICOMSlicerDataBundlePlugin
 +
* DICOMTID1500Plugin
 +
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 +
* DICOMScalarVolumePlugin
 +
* DICOMDiffusionVolumePlugin
 +
* DICOMLongitudinalPETCTPlugin
 +
* DicomSroImportPlugin
 +
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 +
* DicomRtImportExportPlugin
 +
* MultiVolumeImporterPlugin
 +
== Diffusion ==
 +
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 +
=== Diffusion Data Conversion ===
 +
* DWIConvert    <small>(cli)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 +
=== Diffusion Weighted Images ===
 +
* BRAINSDWICleanup    <small>(cli)</small>
 +
<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
 +
=== Import and Export ===
 +
* DWIConvert    <small>(cli)</small>
 +
<span id='Modules_by_category_Diffusion_Process'></span>
 +
=== Utilities ===
 +
* BRAINSDWICleanup    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Endoscopy'></span>
 +
== Endoscopy ==
 +
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Filter'></span>
 +
== Filter ==
 +
* IslandRemoval    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering'></span>
 +
== Filtering ==
 +
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 +
=== Arithmetic ===
 +
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering_Denoising'></span>
 +
=== Denoising ===
 +
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Filtering_Morphology'></span>
 +
=== Morphology ===
 +
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli)</small>
 +
<span id='Modules_by_category_IGT'></span>
 +
== IGT ==
 +
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Informatics'></span>
 +
== Informatics ==
 +
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable)</small>
 +
* DumpSEGFrame    <small>(cli)</small>
 +
* Terminologies    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Informatics_Converters'></span>
 +
=== Converters ===
 +
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Legacy'></span>
 +
== Legacy ==
 +
<span id='Modules_by_category_Legacy_Converters'></span>
 +
=== Converters ===
 +
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSplineToDeformationField]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Legacy_Filtering'></span>
 +
=== Filtering ===
 +
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|OtsuThresholdImageFilter]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVolume|ResampleScalarVolume]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Legacy_Registration'></span>
 +
=== Registration ===
 +
* TestGridTransformRegistration    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|ExpertAutomatedRegistration]]    <small>(cli)</small>
 +
== MultiVolume Support ==
 +
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Quantification'></span>
 +
== Quantification ==
 +
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli)</small>
 +
* SegmentStatistics    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted)</small>
 +
* BRAINSLabelStats    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted)</small>
 +
<span id='Modules_by_category_Registration'></span>
 +
== Registration ==
 +
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable)</small>
 +
* BRAINSResize    <small>(cli)</small>
 +
* PerformMetricTest    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Registration_Specialized'></span>
 +
=== Specialized ===
 +
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable)</small>
 +
* VBRAINSDemonWarp    <small>(cli)</small>
 +
<span id='Modules_by_category_Segmentation'></span>
 +
== Segmentation ==
 +
* EMSegmentQuick    <small>(loadable)</small>
 +
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable)</small>
 +
<span id='Modules_by_category_Segmentation_Specialized'></span>
 +
=== Specialized ===
 +
* BRAINSROIAuto    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli)</small>
 +
* EMSegmentCommandLine    <small>(cli)</small>
 +
<span id='Modules_by_category_Surface_Models'></span>
 +
== Surface Models ==
 +
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli)</small>
 +
<span id='Modules_by_category_Utilities'></span>
 +
== Utilities ==
 +
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted)</small>
 +
* [[Documentation/Nightly/Modules/DataStore|DataStore]]    <small>(loadable)</small>
 +
* DICOMPatcher    <small>(scripted)</small>
 +
* BRAINSStripRotation    <small>(cli)</small>
 +
* EMSegmentTransformToNewFormat    <small>(cli)</small>
 +
<span id='Modules_by_category_Utilities_BRAINS'></span>
 +
=== BRAINS ===
 +
* BRAINSTransformConvert    <small>(cli)</small>
 +
<span id='Modules_by_category_Wizards'></span>
 +
== Wizards ==
 +
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted)</small>
 +
 +
|}

Revision as of 18:39, 28 April 2017

Home < Documentation < Nightly


For the latest Slicer documentation, visit the read-the-docs.


Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS

Where to start ?

Quick overview about Slicer
Information on how to use Slicer Nightly
Set of common questions/answers

How to

Slicer Application


Functions

 

SlicerAnnotationsV2-Small.png Annotations

DataIcon.png Data

DataStoreIcon 128.png Data Store

DICOM.png DICOM

Editor.png Editor

Markups.png Markups

SlicerModels-Small.png Models

SceneViews.png Scene Views

Segmentations.png Segmentations

SegmentEditor.png Segment Editor

Transforms.png Transforms

ViewControllersIcon.png View Controllers

VolumeRendering.png Volume Rendering

SlicerVolume-Small.png Volumes

Welcome.png Welcome to Slicer




Developers Corner

Source code, contribute patch, develop modules
Intended for discussion of programming related questions

Miscellaneous

Slicer user documentation principle and guidelines
Set of screenshots showing Slicer in action.
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Documentation in other languages




Extensions by name

83 extensions:




Modules by category

Converters

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli)

Diffusion Weighted Images

  • BRAINSDWICleanup (cli)

Import and Export

  • DWIConvert (cli)

Utilities

Endoscopy

Filter

  • IslandRemoval (cli)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

MultiVolume Support

Quantification

Registration

Specialized

Segmentation

Specialized

Surface Models

Utilities

  • ScreenCapture (scripted)
  • DataStore (loadable)
  • DICOMPatcher (scripted)
  • BRAINSStripRotation (cli)
  • EMSegmentTransformToNewFormat (cli)

BRAINS

  • BRAINSTransformConvert (cli)

Wizards

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