Difference between revisions of "Documentation/Nightly/Extensions/OpenCAD"
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| + | *[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Tumor Segmentation from DCE-MRI]] | ||
| + | *[[Documentation/{{documentation/version}}/Modules/HeterogeneityCAD|HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps using various metrics (distribution statistics, texture-based, fractal dimensions, geometric measures, etc)]] | ||
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*The SegmentCAD module is designed to segment tumors from DCE-MRI datasets which include a pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels. | *The SegmentCAD module is designed to segment tumors from DCE-MRI datasets which include a pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels. | ||
*The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps. | *The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps. | ||
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Revision as of 19:21, 2 July 2014
Home < Documentation < Nightly < Extensions < OpenCAD
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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This work is supported by NA-MIC, NCIGT, and the Slicer Community. | |||||||
This project is supported by P41 RR019703/RR/NCRR NIH HHS/United States, P01 CA067165/CA/NCI NIH HHS/United States and P41 EB015898/EB/NIBIB NIH HHS/United States |
Modules
- SegmentCAD: Tumor Segmentation from DCE-MRI
- HeterogeneityCAD: Analyze Heterogeneity of Tumor Images and their Parameter Maps using various metrics (distribution statistics, texture-based, fractal dimensions, geometric measures, etc)
Extension Description
- The SegmentCAD module is designed to segment tumors from DCE-MRI datasets which include a pre-contrast image and post-contrast images at different time points. OpenCAD uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
- The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
Tutorials
- SegmentCAD
Data sets
- SegmentCAD
Quick Instructions for Use
- SegmentCAD (Click link for detailed description)
- Select the pre-contrast volume
- Select the first post-contrast volume
- Select the second post-contrast volume
- Select the third post-contrast volume
- Select the fourth post-contrast volume
- Create or select a label map volume node to represent the output of the segmentation
- Click "Apply OpenCAD Segmentation"
Similar Modules
N/A
References
N/A
Information for Developers
Source code: https://github.com/vnarayan13/Slicer-OpenCAD
