Difference between revisions of "Documentation/4.3/Extensions/OpenCAD"
From Slicer Wiki
| Line 21: | Line 21: | ||
{{documentation/{{documentation/version}}/module-introduction-end}} | {{documentation/{{documentation/version}}/module-introduction-end}} | ||
| + | |||
| + | <!-- ---------------------------- --> | ||
| + | {{documentation/{{documentation/version}}/extension-section|Modules}} | ||
| + | *[[Documentation/{{documentation/version}}/Modules/SegmentCAD|SegmentCAD: Segmentation from DCE-MRI]] | ||
| + | *HeterogeneityCAD (under development) | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| Line 26: | Line 31: | ||
*The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels. | *The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. {{documentation/modulename}} uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels. | ||
*The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps. | *The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps. | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
<!-- ---------------------------- | <!-- ---------------------------- | ||
| Line 40: | Line 40: | ||
*SegmentCAD | *SegmentCAD | ||
**[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]] | **[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]] | ||
| + | *HeterogeneityCAD | ||
| + | **Under Development | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Data sets}} | {{documentation/{{documentation/version}}/module-section|Data sets}} | ||
*SegmentCAD | *SegmentCAD | ||
| − | **[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the | + | **[[Media:Breast-data1.zip|Breast DCE-MRI Data Set 1 (zip file containing the nrrd volumes for the SegmentCAD tutorial)]] |
**[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]] | **[[Media:Breast-data2.zip|Breast DCE-MRI Data Set 2 (zip file containing additional test set of nrrd volumes)]] | ||
| − | + | *HeterogeneityCAD | |
| + | **Under Development | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}} | {{documentation/{{documentation/version}}/module-section|Quick Instructions for Use}} | ||
| Line 56: | Line 59: | ||
**Select the fourth post-contrast volume | **Select the fourth post-contrast volume | ||
**Create or select a label map volume node to represent the output of the segmentation | **Create or select a label map volume node to represent the output of the segmentation | ||
| − | **Click "Apply | + | **Click "Apply SegmentCAD Segmentation" |
| − | + | *HeterogeneityCAD | |
| + | **Under Development | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Similar Modules}} | {{documentation/{{documentation/version}}/module-section|Similar Modules}} | ||
Revision as of 03:57, 30 April 2014
Home < Documentation < 4.3 < Extensions < OpenCAD
|
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
|
This work is supported by NA-MIC, NCIGT, and the Slicer Community. | |||||||
This project is supported by P41 RR019703/RR/NCRR NIH HHS/United States, P01 CA067165/CA/NCI NIH HHS/United States and P41 EB015898/EB/NIBIB NIH HHS/United States |
Modules
- SegmentCAD: Segmentation from DCE-MRI
- HeterogeneityCAD (under development)
Extension Description
- The SegmentCAD modules is designed to segment tumors from DCE-MRI datasets which include pre-contrast image and post-contrast images at different time points. OpenCAD uses blackbox methods to calculate the wash-in and wash-out slopes from the time-intensity curves. The segmentation output is a Label Map with red, yellow, and blue colors respectively identifying washout (Type III), plateau (Type II), and persistent (Type I) voxels.
- The HeterogeneityCAD module is under development and will apply metrics to analyze the heterogeneity of tumor images and their parameter maps.
Tutorials
- SegmentCAD
- HeterogeneityCAD
- Under Development
Data sets
- SegmentCAD
- HeterogeneityCAD
- Under Development
Quick Instructions for Use
- SegmentCAD (Click on link for greater details)
- Select the pre-contrast volume
- Select the first post-contrast volume
- Select the second post-contrast volume
- Select the third post-contrast volume
- Select the fourth post-contrast volume
- Create or select a label map volume node to represent the output of the segmentation
- Click "Apply SegmentCAD Segmentation"
- HeterogeneityCAD
- Under Development
Similar Modules
N/A
References
N/A
Information for Developers
Source code: https://github.com/vnarayan13/Slicer-OpenCAD
