Difference between revisions of "Slicer4:VisualBlog"

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Image:UKFTractography_CC.jpg|[http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/UKFTractography UKFTractography] is a module for computing tractography of DWI images using an unscented Kalman filter.  Because of its 2-tensor algorithm, it is able to model fiber crossings and capture many more fibers than a single tensor algorithm.
 
Image:SPV1.png|[http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ShapePopulationViewer ShapePopulationViewer] is an external tool that allows the user to dynamically interact with multiple surfaces at the same time : an interesting tool for shape visualisation and comparison. It now is available as a Slicer Extension.
 
Image:SPV1.png|[http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ShapePopulationViewer ShapePopulationViewer] is an external tool that allows the user to dynamically interact with multiple surfaces at the same time : an interesting tool for shape visualisation and comparison. It now is available as a Slicer Extension.
 
Image:SlicerRT_0.13_SubjectHierarchy_ProstateEclipseLoaded.png|[http://www.na-mic.org/Wiki/index.php/2014_Winter_Project_Week:SubjectHierarchy The Subject hierarchy module and mechanism] organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.
 
Image:SlicerRT_0.13_SubjectHierarchy_ProstateEclipseLoaded.png|[http://www.na-mic.org/Wiki/index.php/2014_Winter_Project_Week:SubjectHierarchy The Subject hierarchy module and mechanism] organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.

Revision as of 23:03, 9 January 2014

Home < Slicer4:VisualBlog

This is the Slicer 4 visual blog. Please click here if you are looking for the old Slicer 3 visual blog.

  • 2013

  • UKFTractography is a module for computing tractography of DWI images using an unscented Kalman filter. Because of its 2-tensor algorithm, it is able to model fiber crossings and capture many more fibers than a single tensor algorithm.

  • ShapePopulationViewer is an external tool that allows the user to dynamically interact with multiple surfaces at the same time : an interesting tool for shape visualisation and comparison. It now is available as a Slicer Extension.

  • The Subject hierarchy module and mechanism organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.

  • The Data Store allows a user to easily upload and download MRB files.

  • The Contours module manages contours in the RT extension package.

  • MultiVolumeExplorer module has been updated to include the capability to plot multivolume pixel values from 2 multivolumes at the same time. This feature is particularly helpful while visualizing the results of model fits, such as those produced by the updated PkModeling extension.

  • A new extension allows to run matlab scripts without having to recompile Slicer. For more information see here

  • Extension Manager, the slicer multiplatform Appstore is open for business and free.

  • Semi-automatic lobe segmentation for regional lung disease analysis as part of the Chest Imaging Platform funded by NHLBI 1R01HL116931

  • The Cardiac MR Extension provides tools for segmentation and analysis of heart tissue and structure for treatment and diagnosis of Atrial Fibrillation.

  • 2012

  • A box plot

  • Fetal brain development. The visualization is using volume rendering and the Multivolume modules in Slicer 4. Click here for the full movie (~24mb). Data downloaded from Imperial College.

  • Leveraging multi viewer layout to arrange 6 slices in the 3D viewer

  • Visualization of complex query "motor system + mass + straight gyrus" using the faceted query module

  • Fibers colored by their mean orientation is now available in the Tractography Display module

  • SlicerRT 0.2 has been released! SlicerRT is 3D Slicer with extensions for radiotherapy research, which is developed by SparKit project with the contributions from Slicer community.

  • The new extension manager

  • Up to date download statistics

  • A combination of ROI cropping of streamlines, fiducial based seeding and labelmap seeding allows to assess the deformation of streamlines which are due to tumor based deformations.

  • New download page which highlights the operating system of the downloading system.

  • New look for the Welcome module and the "Load/Save" toolbar

  • Step one of the DWI to Full-brain tractography wizard

  • Improved 2-stage user interface for the Slice Viewer Controllers

  • Updated Dicom Module

  • Updated Icons for the Core Modules

  • Updated CompareViewers and Viewer Controler Module

  • MultiVolumeExplorer with support for charting. See here for more information.

  • Label Statistics with charting and visualization

  • Image Quantification with Label Statistics, Charting, and Volume Rendering

  • Frame from a movie of slicer code activity in 2011. See the full movie here. Made with gource. Inspired by a an ITKv4 gource movie

  • A ChartView using QWebView and jqPlot with plots defined in MRML

  • A ChartView using QWebView and jqPlot with plots defined in MRML

  • A bar chart tie MRML to a QWebView

  • 2011

  • Compareviewers

  • ChangeTracker visualization of analysis results

  • Sceneview Module

  • Dicom widget

  • Endoscopy module

  • Volumerendering of a CT angiogram

  • Volumerendering of a subvolume of a post Gadolinium T1 weighted image of a GBM. Note the relation of surrounding vessels to the tumor.

  • Note the deformation of the corpus callosum fibers

  • Using an ROI to crop streamlines from a whole brain tractography. The streamlines display color by orientation, the ellipsoids are displaying fractional anisotropy.

  • Annotation module 2011-11

  • Main Gui with pop-up slice controllers

  • The Data Probe

  • Models organized in a hierarchy

  • New Look Oct 2011

  • Dual camera, dual 3D viewer

  • After the facelift for the GUI

  • New models module appearance

  • Slicer4 with Volume Rendering

  • Slicer4 Annotation Module

  • Glyph display on cross-sections

  • First CompareView in Slicer4 2011

  • Slicer 4 Annotation Module 2011-01-24

  • Slicer 4 Annotation Module 2011-01-24

  • Slicer 4 Live ultrasound module for IGT spine procedures

  • Slicer 4 Live ultrasound module for IGT prostate procedures

  • 2010

  • Slicer 4 Annotation Module

  • Slicer with Qt only

  • ROI Module

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