Modules:Volumes:Diffusion Editor-Documentation

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Diffusion Editor

Diffusion Editor, showing tracts and glyphs on helix example

tracts and glyphs view

tracts and glyphs view - +90° rotation of measurement frame

General Information

Module Type & Category

Type: Interactive

Category: Diffusion Imaging

Authors, Collaborators & Contact

• Author: Kerstin Kessel
• Supervisor: Steve Pieper, Ron Kikinis

Module Description

TODO: Overview of what the module does goes here.

Usage

Examples, Use Cases & Tutorials

TODO:

• Note use cases for which this module is especially appropriate, and/or link to examples.
• Link to examples of the module's use
• Link to any existing tutorials

Quick Tour of Features and Use

TODO: List all the panels in your interface, their features, what they mean, and how to use them. For instance:

• Measurement Frame panel:
• Gradients panel:
• Testing panel:

Development

Status / Implementation Progress

The editor is now successfully integrated in the Volumes module of the trunk version of Slicer3.

• measurement frame (gui/load/change/save): 100%
• gradients (gui/load/change/save): 100%
• undo/redo/restore mechanism: 100%
• test: 75%
  • tensor estimation with existing clm: 100%
  • glyphs view in all32 planes with the possibility to change resolution: 100%
  • alternative tensor estimation with new filter: 0%
    • filter for tensor rotation: 0%
  • tractography fiducial seeding: 100%
• testing: 0%
• documentation, tutorials (videos): 40%
• writing master thesis: 5% :-)

Known bugs

Follow this link to the Slicer3 bug tracker to see known bugs, or to report a new one. Please select the usability issue category when browsing or contributing:

http://na-mic.org/Mantis/main_page.php

Source code & documentation

Source code is available here:

http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerGradientEditorWidget.cxx http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerGradientEditorWidget.h

http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerGradientEditorLogic.cxx http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerGradientEditorLogic.h

http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerMeasurementFrameWidget.cxx http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerMeasurementFrameWidget.h

http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerGradientsWidget.cxx http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerGradientsWidget.h

http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerDWITestingWidget.cxx http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/Volumes/vtkSlicerDWITestingWidget.h

Links to documentation generated by doxygen:

http://www.na-mic.org/Slicer/Documentation/Slicer3/html/

More Information

Acknowledgement

Include funding and other support here.

References

Publications related to this module go here. Links to pdfs would be useful.

Nrrd format: http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format

DTMRI: http://wiki.na-mic.org/Wiki/index.php/Slicer3:DTMRI

DICOM for DWI and DTI : http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:DICOM_for_DWI_and_DTI