Difference between revisions of "Documentation/4.1/SlicerApplication/LookupTables/TractographyColors"
From Slicer Wiki
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|- | |- | ||
|7 | |7 | ||
− | |r | + | |r IOFF |
|style="background:rgb(144,238,144)"|rgb(144,238,144) | |style="background:rgb(144,238,144)"|rgb(144,238,144) | ||
− | |right inferior | + | |right inferior occipito-frontal fasciculus |
|- | |- | ||
|8 | |8 | ||
− | |l | + | |l IOFF |
|style="background:rgb(192,104,88)"|rgb(192,104,88) | |style="background:rgb(192,104,88)"|rgb(192,104,88) | ||
− | |left inferior | + | |left inferior occipito-frontal fasciculus |
|- | |- | ||
|9 | |9 | ||
Line 151: | Line 151: | ||
|- | |- | ||
|26 | |26 | ||
− | | | + | |l MDLF |
|style="background:rgb(0,145,30)"|rgb(0,145,30) | |style="background:rgb(0,145,30)"|rgb(0,145,30) | ||
− | | | + | |left middle longitudinal fasciculus |
|- | |- | ||
|27 | |27 | ||
− | | | + | |r EC |
|style="background:rgb(214,230,130)"|rgb(214,230,130) | |style="background:rgb(214,230,130)"|rgb(214,230,130) | ||
− | | | + | |right extreme capsule |
|- | |- | ||
|28 | |28 | ||
− | | | + | |l EC |
|style="background:rgb(78,63,0)"|rgb(78,63,0) | |style="background:rgb(78,63,0)"|rgb(78,63,0) | ||
− | | | + | |left extreme capsule |
|- | |- | ||
|29 | |29 | ||
− | | | + | |DHC |
|style="background:rgb(218,255,255)"|rgb(218,255,255) | |style="background:rgb(218,255,255)"|rgb(218,255,255) | ||
− | | | + | |Dorsal hippocampal comissure |
|- | |- | ||
|30 | |30 | ||
− | | | + | |AnC |
|style="background:rgb(170,250,250)"|rgb(170,250,250) | |style="background:rgb(170,250,250)"|rgb(170,250,250) | ||
− | | | + | |Anterior Comissure |
|- | |- | ||
|31 | |31 | ||
− | | | + | |FC |
|style="background:rgb(140,224,228)"|rgb(140,224,228) | |style="background:rgb(140,224,228)"|rgb(140,224,228) | ||
− | | | + | |Forniceal Comissure |
|- | |- | ||
|32 | |32 | ||
− | | | + | |r SOFF |
|style="background:rgb(188,65,28)"|rgb(188,65,28) | |style="background:rgb(188,65,28)"|rgb(188,65,28) | ||
− | | | + | |right superior occipito-frontal fasciculus |
|- | |- | ||
|33 | |33 | ||
− | | | + | |l SOFF |
|style="background:rgb(216,191,216)"|rgb(216,191,216) | |style="background:rgb(216,191,216)"|rgb(216,191,216) | ||
− | | | + | |left superior occipito-frontal fasciculus |
|- | |- | ||
|34 | |34 | ||
− | | | + | |l CT |
|style="background:rgb(145,60,66)"|rgb(145,60,66) | |style="background:rgb(145,60,66)"|rgb(145,60,66) | ||
− | | | + | |left cortico-thalamical pathways |
|- | |- | ||
|35 | |35 | ||
− | | | + | |r CT |
|style="background:rgb(150,98,83)"|rgb(150,98,83) | |style="background:rgb(150,98,83)"|rgb(150,98,83) | ||
− | | | + | |right cortico-thalamical pathways |
|- | |- | ||
|36 | |36 | ||
− | | | + | |l SC |
|style="background:rgb(177,122,101)"|rgb(177,122,101) | |style="background:rgb(177,122,101)"|rgb(177,122,101) | ||
− | | | + | |left cortico-striatal pathways |
|- | |- | ||
|37 | |37 | ||
− | | | + | |r SC |
|style="background:rgb(244,214,49)"|rgb(244,214,49) | |style="background:rgb(244,214,49)"|rgb(244,214,49) | ||
− | | | + | |right cortico-striatal pathways |
|- | |- | ||
|38 | |38 | ||
− | | | + | |l CP |
|style="background:rgb(250,250,225)"|rgb(250,250,225) | |style="background:rgb(250,250,225)"|rgb(250,250,225) | ||
− | | | + | |left cortico-pontine projections |
|- | |- | ||
|39 | |39 | ||
− | | | + | |r CP |
|style="background:rgb(200,200,215)"|rgb(200,200,215) | |style="background:rgb(200,200,215)"|rgb(200,200,215) | ||
− | | | + | |right cortico-pontine projections |
|- | |- | ||
|40 | |40 | ||
− | | | + | |PT |
|style="background:rgb(68,131,98)"|rgb(68,131,98) | |style="background:rgb(68,131,98)"|rgb(68,131,98) | ||
− | | | + | |Pontine Tract |
|- | |- | ||
|41 | |41 | ||
− | | | + | |PC |
|style="background:rgb(128,174,128)"|rgb(128,174,128) | |style="background:rgb(128,174,128)"|rgb(128,174,128) | ||
− | | | + | |Posterior comissure |
|- | |- | ||
|42 | |42 |
Revision as of 14:21, 7 August 2012
Home < Documentation < 4.1 < SlicerApplication < LookupTables < TractographyColorsTemplate:Documentation/4.1/TractographyColors
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- If changing the order of the table, the indices can be recreated with this tcl script.
This is the look-up table for the parcellation of the white matter of the brain.
- Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab
Lookup table
integer_label | text_label | color | notes |
---|---|---|---|
0 | background | rgba(0,0,0,0) | |
1 | CC | rgb(128,174,128) | Corpus Callosum |
2 | CC genu | rgb(241,214,145) | Genu of the Corpus Callosum |
3 | CC body | rgb(177,122,101) | Body of the Corpus Callosum |
4 | CC splenium | rgb(111,184,210) | Splenium of the Corpus Callosum |
5 | r AC | rgb(216,101,79) | right arcuate fasciculus |
6 | l AC | rgb(221,130,101) | left arcuate fasciculus |
7 | r IOFF | rgb(144,238,144) | right inferior occipito-frontal fasciculus |
8 | l IOFF | rgb(192,104,88) | left inferior occipito-frontal fasciculus |
9 | r ILF | rgb(220,245,20) | right inferior longitudinal fasciculus |
10 | l ILF | rgb(78,63,0) | left inferior longitudinal fasciculus |
11 | r UNC | rgb(255,250,220) | right uncinate fasciculus |
12 | l UNC | rgb(230,220,70) | left uncinate fasciculus |
13 | r CST | rgb(200,200,235) | right cortico-spinal tract |
14 | l CST | rgb(250,250,210) | left cortico-spinal tract |
15 | r OR | rgb(244,214,49) | right optic radiation |
16 | l OR | rgb(0,151,206) | left optic radiation |
17 | r CB | rgb(216,101,79) | right cingulate bundle |
18 | l CB | rgb(183,156,220) | left cingulate bundle |
19 | r SLF 1 | rgb(183,214,211) | right superior longitudinal fasciculus 1 |
20 | l SLF 1 | rgb(152,189,207) | left superior longitudinal fasciculus 1 |
21 | r SLF 2 | rgb(111,184,210) | right superior longitudinal fasciculus 2 |
22 | l SLF 2 | rgb(178,212,242) | left superior longitudinal fasciculus 2 |
23 | r SLF 3 | rgb(68,172,100) | right superior longitudinal fasciculus 3 |
24 | l SLF 3 | rgb(111,197,131) | left superior longitudinal fasciculus 3 |
25 | r MDLF | rgb(85,188,255) | right middle longitudinal fasciculus |
26 | l MDLF | rgb(0,145,30) | left middle longitudinal fasciculus |
27 | r EC | rgb(214,230,130) | right extreme capsule |
28 | l EC | rgb(78,63,0) | left extreme capsule |
29 | DHC | rgb(218,255,255) | Dorsal hippocampal comissure |
30 | AnC | rgb(170,250,250) | Anterior Comissure |
31 | FC | rgb(140,224,228) | Forniceal Comissure |
32 | r SOFF | rgb(188,65,28) | right superior occipito-frontal fasciculus |
33 | l SOFF | rgb(216,191,216) | left superior occipito-frontal fasciculus |
34 | l CT | rgb(145,60,66) | left cortico-thalamical pathways |
35 | r CT | rgb(150,98,83) | right cortico-thalamical pathways |
36 | l SC | rgb(177,122,101) | left cortico-striatal pathways |
37 | r SC | rgb(244,214,49) | right cortico-striatal pathways |
38 | l CP | rgb(250,250,225) | left cortico-pontine projections |
39 | r CP | rgb(200,200,215) | right cortico-pontine projections |
40 | PT | rgb(68,131,98) | Pontine Tract |
41 | PC | rgb(128,174,128) | Posterior comissure |
42 | right frontal lobe | rgb(83,146,164) | |
43 | left frontal lobe | rgb(83,146,164) | |
44 | right temporal lobe | rgb(162,115,105) | |
45 | left temporal lobe | rgb(162,115,105) | |
46 | right parietal lobe | rgb(141,93,137) | |
47 | left parietal lobe | rgb(141,93,137) | |
48 | right occipital lobe | rgb(182,166,110) | |
49 | left occipital lobe | rgb(182,166,110) | |
50 | right insular lobe | rgb(188,135,166) | |
51 | left insular lobe | rgb(188,135,166) | |
52 | right limbic lobe | rgb(154,150,201) | |
53 | left limbic lobe | rgb(154,150,201) | |
54 | right striatum | rgb(177,140,190) | |
55 | left striatum | rgb(177,140,190) | |
56 | right caudate nucleus | rgb(30,111,85) | |
57 | left caudate nucleus | rgb(30,111,85) | |
58 | right putamen | rgb(210,157,166) | |
59 | left putamen | rgb(210,157,166) | |
60 | right pullidum | rgb(48,129,126) | |
61 | left pallidum | rgb(48,129,126) | |
62 | right amygdaloid complex | rgb(98,153,112) | |
63 | left amygdaloid complex | rgb(98,153,112) | |
64 | diencephalon | rgb(69,110,53) | |
65 | thalamus | rgb(166,113,137) | |
66 | right thalamus | rgb(122,101,38) | |
67 | left thalamus | rgb(122,101,38) | |
68 | pineal gland | rgb(253,135,192) | |
69 | midbrain | rgb(145,92,109) | |
70 | substantia nigra | rgb(46,101,131) | |
71 | right substantia nigra | rgb(0,108,112) | |
72 | left substantia nigra | rgb(0,108,112) | |
73 | cerebral white matter | rgb(250,250,225) | |
74 | right superior longitudinal fasciculus | rgb(127,150,88) | |
75 | left superior longitudinal fasciculus | rgb(127,150,88) | |
76 | right inferior longitudinal fasciculus | rgb(159,116,163) | |
77 | left inferior longitudinal fasciculus | rgb(159,116,163) | |
78 | right arcuate fasciculus | rgb(125,102,154) | |
79 | left arcuate fasciculus | rgb(125,102,154) | |
80 | right uncinate fasciculus | rgb(106,174,155) | |
81 | left uncinate fasciculus | rgb(106,174,155) | |
82 | right cingulum bundle | rgb(154,146,83) | |
83 | left cingulum bundle | rgb(154,146,83) | |
84 | projection fibers | rgb(126,126,55) | |
85 | right corticospinal tract | rgb(201,160,133) | |
86 | left corticospinal tract | rgb(201,160,133) | |
87 | right optic radiation | rgb(78,152,141) | |
88 | left optic radiation | rgb(78,152,141) | |
89 | right medial lemniscus | rgb(174,140,103) | |
90 | left medial lemniscus | rgb(174,140,103) | |
91 | right superior cerebellar peduncle | rgb(139,126,177) | |
92 | left superior cerebellar peduncle | rgb(139,126,177) | |
93 | right middle cerebellar peduncle | rgb(148,120,72) | |
94 | left middle cerebellar peduncle | rgb(148,120,72) | |
95 | right inferior cerebellar peduncle | rgb(186,135,135) | |
96 | left inferior cerebellar peduncle | rgb(186,135,135) | |
97 | optic chiasm | rgb(99,106,24) | |
98 | right optic tract | rgb(156,171,108) | |
99 | left optic tract | rgb(156,171,108) | |
100 | right fornix | rgb(64,123,147) | |
101 | left fornix | rgb(64,123,147) | |
102 | commissural fibers | rgb(138,95,74) | |
103 | corpus callosum | rgb(97,113,158) | |
104 | posterior commissure | rgb(126,161,197) | |
105 | cerebellar white matter | rgb(194,195,164) | |
106 | CSF space | rgb(85,188,255) | |
107 | ventricles of brain | rgb(88,106,215) | |
108 | right lateral ventricle | rgb(88,106,215) | |
109 | left lateral ventricle | rgb(88,106,215) | |
110 | right third ventricle | rgb(88,106,215) | |
111 | left third ventricle | rgb(88,106,215) | |
112 | cerebral aqueduct | rgb(88,106,215) | |
113 | fourth ventricle | rgb(88,106,215) | |
114 | subarachnoid space | rgb(88,106,215) | |
115 | spinal cord | rgb(244,214,49) | |
116 | gray matter of spinal cord | rgb(200,200,215) | |
117 | white matter of spinal cord | rgb(250,250,225) | |
118 | endocrine system of brain | rgb(82,174,128) | |
119 | pituitary gland | rgb(57,157,110) | |
120 | adenohypophysis | rgb(60,143,83) | |
121 | neurohypophysis | rgb(92,162,109) | |
122 | meninges | rgb(255,244,209) | |
123 | dura mater | rgb(255,244,209) | |
124 | arachnoid | rgb(255,244,209) | |
125 | pia mater | rgb(255,244,209) | |
126 | muscles of head | rgb(201,121,77) | |
127 | salivary glands | rgb(70,163,117) | |
128 | lips | rgb(188,91,95) | |
129 | nose | rgb(177,122,101) | |
130 | tongue | rgb(166,84,94) | |
131 | soft palate | rgb(182,105,107) | |
132 | right inner ear | rgb(229,147,118) | |
133 | left inner ear | rgb(229,147,118) | |
134 | right external ear | rgb(174,122,90) | |
135 | left external ear | rgb(174,122,90) | |
136 | right middle ear | rgb(201,112,73) | |
137 | left middle ear | rgb(201,112,73) | |
138 | right eyeball | rgb(194,142,0) | |
139 | left eyeball | rgb(194,142,0) | |
140 | skull | rgb(241,213,144) | |
141 | right frontal bone | rgb(203,179,77) | |
142 | left frontal bone | rgb(203,179,77) | |
143 | right parietal bone | rgb(229,204,109) | |
144 | left parietal bone | rgb(229,204,109) | |
145 | right temporal bone | rgb(255,243,152) | |
146 | left temporal bone | rgb(255,243,152) | |
147 | right sphenoid bone | rgb(209,185,85) | |
148 | left sphenoid bone | rgb(209,185,85) | |
149 | right ethmoid bone | rgb(248,223,131) | |
150 | left ethmoid bone | rgb(248,223,131) | |
151 | occipital bone | rgb(255,230,138) | |
152 | maxilla | rgb(196,172,68) | |
153 | right zygomatic bone | rgb(255,255,167) | |
154 | right lacrimal bone | rgb(255,250,160) | |
155 | vomer bone | rgb(255,237,145) | |
156 | right palatine bone | rgb(242,217,123) | |
157 | left palatine bone | rgb(242,217,123) | |
158 | mandible | rgb(222,198,101) | |
159 | neck | rgb(177,122,101) | |
160 | muscles of neck | rgb(213,124,109) | |
161 | pharynx | rgb(184,105,108) | |
162 | larynx | rgb(150,208,243) | |
163 | thyroid gland | rgb(62,162,114) | |
164 | right parathyroid glands | rgb(62,162,114) | |
165 | left parathyroid glands | rgb(62,162,114) | |
166 | skeleton of neck | rgb(242,206,142) | |
167 | hyoid bone | rgb(250,210,139) | |
168 | cervical vertebral column | rgb(255,255,207) | |
169 | thorax | rgb(177,122,101) | |
170 | trachea | rgb(182,228,255) | |
171 | bronchi | rgb(175,216,244) | |
172 | right lung | rgb(197,165,145) | |
173 | left lung | rgb(197,165,145) | |
174 | superior lobe of right lung | rgb(172,138,115) | |
175 | superior lobe of left lung | rgb(172,138,115) | |
176 | middle lobe of right lung | rgb(202,164,140) | |
177 | inferior lobe of right lung | rgb(224,186,162) | |
178 | inferior lobe of left lung | rgb(224,186,162) | |
179 | pleura | rgb(255,245,217) | |
180 | heart | rgb(206,110,84) | |
181 | right atrium | rgb(210,115,89) | |
182 | left atrium | rgb(203,108,81) | |
183 | atrial septum | rgb(233,138,112) | |
184 | ventricular septum | rgb(195,100,73) | |
185 | right ventricle of heart | rgb(181,85,57) | |
186 | left ventricle of heart | rgb(152,55,13) | |
187 | mitral valve | rgb(159,63,27) | |
188 | tricuspid valve | rgb(166,70,38) | |
189 | aortic valve | rgb(218,123,97) | |
190 | pulmonary valve | rgb(225,130,104) | |
191 | aorta | rgb(224,97,76) | |
192 | pericardium | rgb(255,244,209) | |
193 | pericardial cavity | rgb(184,122,154) | |
194 | esophagus | rgb(211,171,143) | |
195 | thymus | rgb(47,150,103) | |
196 | mediastinum | rgb(255,244,209) | |
197 | skin of thoracic wall | rgb(173,121,88) | |
198 | muscles of thoracic wall | rgb(188,95,76) | |
199 | skeleton of thorax | rgb(255,239,172) | |
200 | thoracic vertebral column | rgb(226,202,134) | |
201 | ribs | rgb(253,232,158) | |
202 | sternum | rgb(244,217,154) | |
203 | right clavicle | rgb(205,179,108) | |
204 | left clavicle | rgb(205,179,108) | |
205 | abdominal cavity | rgb(186,124,161) | |
206 | abdomen | rgb(177,122,101) | |
207 | peritoneum | rgb(255,255,220) | |
208 | omentum | rgb(234,234,194) | |
209 | peritoneal cavity | rgb(204,142,178) | |
210 | retroperitoneal space | rgb(180,119,153) | |
211 | stomach | rgb(216,132,105) | |
212 | duodenum | rgb(255,253,229) | |
213 | small bowel | rgb(205,167,142) | |
214 | colon | rgb(204,168,143) | |
215 | anus | rgb(255,224,199) | |
216 | liver | rgb(221,130,101) | |
217 | biliary tree | rgb(0,145,30) | |
218 | gallbladder | rgb(139,150,98) | |
219 | pancreas | rgb(249,180,111) | |
220 | spleen | rgb(157,108,162) | |
221 | urinary system | rgb(203,136,116) | |
222 | right kidney | rgb(185,102,83) | |
223 | left kidney | rgb(185,102,83) | |
224 | right ureter | rgb(247,182,164) | |
225 | left ureter | rgb(247,182,164) | |
226 | urinary bladder | rgb(222,154,132) | |
227 | urethra | rgb(124,186,223) | |
228 | right adrenal gland | rgb(249,186,150) | |
229 | left adrenal gland | rgb(249,186,150) | |
230 | female internal genitalia | rgb(244,170,147) | |
231 | uterus | rgb(255,181,158) | |
232 | right fallopian tube | rgb(255,190,165) | |
233 | left fallopian tube | rgb(227,153,130) | |
234 | right ovary | rgb(213,141,113) | |
235 | left ovary | rgb(213,141,113) | |
236 | vagina | rgb(193,123,103) | |
237 | male internal genitalia | rgb(216,146,127) | |
238 | prostate | rgb(230,158,140) | |
239 | right seminal vesicle | rgb(245,172,147) | |
240 | left seminal vesicle | rgb(245,172,147) | |
241 | right deferent duct | rgb(241,172,151) | |
242 | left deferent duct | rgb(241,172,151) | |
243 | skin of abdominal wall | rgb(177,124,92) | |
244 | muscles of abdominal wall | rgb(171,85,68) | |
245 | skeleton of abdomen | rgb(217,198,131) | |
246 | lumbar vertebral column | rgb(212,188,102) | |
247 | female external genitalia | rgb(185,135,134) | |
248 | male external genitalia | rgb(185,135,134) | |
249 | skeleton of upper limb | rgb(198,175,125) | |
250 | muscles of upper limb | rgb(194,98,79) | |
251 | right upper limb | rgb(177,122,101) | |
252 | left upper limb | rgb(177,122,101) | |
253 | right shoulder | rgb(177,122,101) | |
254 | left shoulder | rgb(177,122,101) | |
255 | right arm | rgb(177,122,101) | |
256 | left arm | rgb(177,122,101) | |
257 | right elbow | rgb(177,122,101) | |
258 | left elbow | rgb(177,122,101) | |
259 | right forearm | rgb(177,122,101) | |
260 | left forearm | rgb(177,122,101) | |
261 | right wrist | rgb(177,122,101) | |
262 | left wrist | rgb(177,122,101) | |
263 | right hand | rgb(177,122,101) | |
264 | left hand | rgb(177,122,101) | |
265 | skeleton of lower limb | rgb(255,238,170) | |
266 | muscles of lower limb | rgb(206,111,93) | |
267 | right lower limb | rgb(177,122,101) | |
268 | left lower limb | rgb(177,122,101) | |
269 | right hip | rgb(177,122,101) | |
270 | left hip | rgb(177,122,101) | |
271 | right thigh | rgb(177,122,101) | |
272 | left thigh | rgb(177,122,101) | |
273 | right knee | rgb(177,122,101) | |
274 | left knee | rgb(177,122,101) | |
275 | right leg | rgb(177,122,101) | |
276 | left leg | rgb(177,122,101) | |
277 | right foot | rgb(177,122,101) | |
278 | left foot | rgb(177,122,101) | |
279 | peripheral nervous system | rgb(216,186,0) | |
280 | autonomic nerve | rgb(255,226,77) | |
281 | sympathetic trunk | rgb(255,243,106) | |
282 | cranial nerves | rgb(255,234,92) | |
283 | vagus nerve | rgb(240,210,35) | |
284 | peripheral nerve | rgb(224,194,0) | |
285 | circulatory system | rgb(213,99,79) | |
286 | systemic arterial system | rgb(217,102,81) | |
287 | systemic venous system | rgb(0,147,202) | |
288 | pulmonary arterial system | rgb(0,122,171) | |
289 | pulmonary venous system | rgb(186,77,64) | |
290 | lymphatic system | rgb(111,197,131) | |
291 | needle | rgb(240,255,30) | |
292 | region 0 | rgb(185,232,61) | |
293 | region 1 | rgb(0,226,255) | |
294 | region 2 | rgb(251,159,255) | |
295 | region 3 | rgb(230,169,29) | |
296 | region 4 | rgb(0,194,113) | |
297 | region 5 | rgb(104,160,249) | |
298 | region 6 | rgb(221,108,158) | |
299 | region 7 | rgb(137,142,0) | |
300 | region 8 | rgb(230,70,0) | |
301 | region 9 | rgb(0,147,0) | |
302 | region 10 | rgb(0,147,248) | |
303 | region 11 | rgb(231,0,206) | |
304 | region 12 | rgb(129,78,0) | |
305 | region 13 | rgb(0,116,0) | |
306 | region 14 | rgb(0,0,255) | |
307 | region 15 | rgb(157,0,0) | |
308 | unknown | rgb(100,100,130) | |
309 | cyst | rgb(205,205,100) |