Difference between revisions of "Documentation/4.1/Extensions/Plastimatch"
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[http://plastimatch.org/data_sources.html Sample data] to use with modules. | [http://plastimatch.org/data_sources.html Sample data] to use with modules. | ||
| + | {| | ||
| + | |[[Image:plastimatch_dicomrt_ss.png|thumb|280px|DICOM-RT Structure Set]] | ||
| + | |[[Image:plastimatch_dicomrt_dose.png|thumb|280px|DICOM-RT Dose]] | ||
| + | |[[Image:plastimatch_image_1.png|thumb|280px|Before Registration]] | ||
| + | |[[Image:plastimatch_image_2.png|thumb|280px|After Registration]] | ||
| + | |[[Image:before_reg.png|thumb|280px|Before Registration]] | ||
| + | |[[Image:after_reg.png|thumb|280px|After Registration]] | ||
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| + | |} | ||
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| + | |[[Image:plastimatch_tutorial_ppt.png|thumb|280px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1023/3D_Slicer_Plastimatch_Registration_Tutorial.ppt Download tutorial]]] | ||
| + | |[[Image:plastimatch_tutorial_data.png|thumb|230px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1004/rider-lung-images.tar.gz Download tutorial data]]] | ||
| + | |[[Image:plastimatch_dicomrt_tutorial_ppt.png|thumb|280px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1568/3D_Slicer_Plastimatch_DICOM_RT_Tutorial_2010_12_28.pdf Download tutorial (PDF)]]] | ||
| + | |[[Image:plastimatch_dicomrt_ss.png|thumb|230px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/934/chest-phantom-dicomrt-xio-4.33.02.tar.gz (Download tutorial data)]]] | ||
| + | |[[Image:3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.png|thumb|280px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1622/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt Download tutorial]]] | ||
| + | |[[Image:fixed.png|thumb|230px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1619/synthetic_img.zip Download tutorial data]]] | ||
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| − | N | + | * G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007. |
| + | * V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008. | ||
| + | * Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008. | ||
| + | * G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010. | ||
| + | * N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011. | ||
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Revision as of 01:00, 18 April 2012
Home < Documentation < 4.1 < Extensions < Plastimatch
Introduction and Acknowledgements
Author: Greg Sharp
Contributors: Jean-Christophe Filion-Robin, Kitware
Contact: Greg Sharp, <email>gcsharp@partners.org</email>
Website: http://plastimatch.org/
License: BSD
Extension Description
Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include:
- B-spline method for deformable image registration (GPU and multicore accelerated)
- Demons method for deformable image registration (GPU accelerated)
- ITK-based algorithms for translation, rigid, affine, demons, and B-spline registration
- Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types
- Landmark-based deformable registration using thin-plate splines for global registration
- Landmark-based deformable registration using radial basis functions for local corrections
- Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze
- DICOM and DICOM-RT import and export
- XiO import and export
Modules
- Plastimatch Automatic deformable image registration
- Plastimatch DICOM-RT import
- Plastimatch DICOM-RT export
- Plastimatch Dose Comparison
- Plastimatch Dose Volume Histogram
- Plastimatch LANDWARP Landmark
- Plastimatch Synthetic Image Generation
- Plastimatch Threshold in a box
- Plastimatch XFORMWARP
Use Cases
Sample data to use with modules.
Tutorials
Similar Extensions
N/A
References
- G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
- V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
- Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
- G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
- N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
Information for Developers
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Section under construction. |
