DTI Fiber Clustering Module-Documentation-3.6.2

Module Name

Fiber Clustering and Analysis (EM Fiber Clustering) Module

Module interface

An example of DTI fiber clustering and tract-oriented quantitative analysis

Installation

To add the module to an installed binary of slicer (3.6.2 and later):

• Use the View->Extension Manager menu option
• The dialog will be initialized with the URL to the extensions that have been compiled to match your binary of slicer.
• Select EM Fiber Clustering to install and click to download. The installed extension, Fiber Clustering and Analysis, will be available when you restart slicer under Modules --> Diffusion --> Tractography.

Please report any installation problem to Mahnaz Maddah (mmaddah at alum.mit.edu)

Single-Subject

Test1 Data - Clustering of the cingulum fiber tracts Media:single_subject.tar.gz

Single-Subject with Atlas-Based Seeding

Test2 Data - Clustering of the uncinate fasciculus tract using the SRI24 atlas Media:atlas_based_seeding.tar.gz

Multi-Subject

Test3 Data - Clustering of the genu using the SRI24 atlas Media:multi-subject.tar.gz