Difference between revisions of "EMSegmenter-Tasks:MRI-Human-Brain"
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==Anatomical Tree== | ==Anatomical Tree== | ||
| − | * | + | * root |
| − | ** BG | + | ** background (BG) |
| − | *** AIR | + | *** air (AIR) |
| − | *** | + | *** skull (skull) |
| − | ** ICC | + | ** intracranial cavity (ICC) |
| − | *** WM | + | *** white matter (WM) |
| − | *** GM | + | *** grey matter (GM) |
| − | *** CSF | + | *** cerebrospinal fluid (CSF) |
==Atlas== | ==Atlas== | ||
| Line 19: | Line 19: | ||
Image Dimension = 256 x 256 x 124 <br> | Image Dimension = 256 x 256 x 124 <br> | ||
Image Spacing = 0.9375 x 0.9375 x 0.1.5 | Image Spacing = 0.9375 x 0.9375 x 0.1.5 | ||
| + | |||
| + | ==Pre-Processing== | ||
| + | |||
| + | * 1 step: image inhomogeneity correction [http://www.slicer.org/slicerWiki/index.php/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4ITKBiasFieldCorrection] | ||
| + | * 2 step: atlas-to-target registration [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BRAINSFit] | ||
| + | * 3 step: automatic mean/covariance calculation. ('''TODO Kilian''') | ||
==Result== | ==Result== | ||
[[Image:MRI-Human-Brain_BeforeAfter.png]] | [[Image:MRI-Human-Brain_BeforeAfter.png]] | ||
Revision as of 17:00, 30 November 2010
Home < EMSegmenter-Tasks:MRI-Human-BrainMRI Human Brain
Description
MRI Human Head pipeline
Anatomical Tree
- root
- background (BG)
- air (AIR)
- skull (skull)
- intracranial cavity (ICC)
- white matter (WM)
- grey matter (GM)
- cerebrospinal fluid (CSF)
- background (BG)
Atlas
Image Dimension = 256 x 256 x 124
Image Spacing = 0.9375 x 0.9375 x 0.1.5
Pre-Processing
- 1 step: image inhomogeneity correction N4ITKBiasFieldCorrection
- 2 step: atlas-to-target registration BRAINSFit
- 3 step: automatic mean/covariance calculation. (TODO Kilian)
Result
