CCA:Atlases:Florins 2010 Hierarchy Short

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material

tissues

• tissue of nervous system
  • gray matter
  • white matter
  • nerve
• tissue of circulatory system
  • vein
  • artery
  • capillary
• connective tissue
  • ligament
  • tendon
  • cartilage
  • muscle
• tissue of skeleton
  • bone
• tissue of lymphatic system
  • lymph node
  • lymphatic vessel
• anatomical space

biological material

• blood
• cerebro-spinal fluid
• bile
• urine
• feces

non-biological material

• air
• liquid

pathology

• tumor
• edema
• bleeding
• necrosis
• clot
• embolism

human body

head

central nervous system

brain

• brain parenchyma
  • gray matter of brain
    • telencephalon
      • cerebral cortex
        • right frontal lobe
        • left frontal lobe
        • right temporal lobe
        • left temporal lobe
        • right parietal lobe
        • left parietal lobe
        • right occipital lobe
        • left occipital lobe
        • right insular lobe
        • left insular lobe
        • right limbic lobe
        • left limbic lobe
      • left striatum
        • • right caudate nucleus
          • right putamen
        • left striatum
          • left caudate nucleus
          • left putamen
        • right pallidum
        • left pallidum
        • right amygdaloid complex
        • left amygdaloid complex
    • diencephalon
      • thalamus
        • right thalamus
        • left thalamus
        • pineal gland
        • posterior commissure
    • gray matter of midbrain
      • substantia nigra
        • right substantia nigra
        • left substantia nigra
  • cerebral white matter
    • • right superior longitudinal fasciculus
      • left superior longitudinal fasciculus
      • right inferior longitudinal fasciculus
      • left inferior longitudinal fasciculus
      • right arcuate fasciculus
      • left arcuate fasciculus
      • right uncinate fasciculus
      • left uncinate fasciculus
      • right cingulum bundle
      • left cingulum bundle
    • projection fibers
      • right corticospinal tract
      • left corticospinal tract
      • right optic radiation
      • left optic radiation
      • right medial lemniscus
      • left medial lemniscus
      • right superior cerebellar peduncle
      • left superior cerebellar peduncle
      • right middle cerebellar peduncle
      • left middle cerebellar peduncle
      • right inferior cerebellar peduncle
      • left inferior cerebellar peduncle
      • optic chiasm
      • left optic tract
      • right optic tract
      • right fornix
      • left fornix
    • commissural fibers
      • corpus callosum
      • anterior commissure
      • posterior commissure
  • cerebellar white matter
• CSF spaces
  • ventricles of brain
    • right lateral ventricle
    • left lateral ventricle
    • third ventricle
    • cerebral aqueduct
    • fourth ventricle
  • subarachnoid space

spinal cord

• gray matter of spinal cord
• white matter of spinal cord

endocrine system of brain

• pituitary gland
  • adenohypophysis
  • neurohypophysis

meninges

• dura mater
• arachnoid
• pia mater

soft tissue of head

• skin of head
• muscles of head
• salivary glands
• lips
• nose
• tongue
• soft palate
• right external ear
• left external ear
• right middle ear
• left middle ear
• right internal ear
• left internal ear
• right eyeball
• left eyeball

skeleton of the head

skull

• right frontal bone
• left frontal bone
• right parietal bone
• left parietal bone
• right temporal bone
• left temporal bone
• right sphenoid bone
• left sphenoid bone
• right ethmoid bone
• left ethmoid bone
• occipital bone
• maxilla
• right zygomatic bone
• left zygomatic bone
• right lacrimal bone
• left lacrimal bone
• vomer bone
• right palatine bone
• left palatine bone
• mandible

neck

soft tissue of neck

parathyroid glands

• right parathyroid glands
• left parathyroid glands

skeleton of neck

• hyoid bone
• cervical vertebral column

thorax

soft tissue of thorax

contents of thoracic cavity

right lung

• superior lobe of right lung
• middle lobe of right lung
• inferior lobe of right lung

left lung

• superior lobe of left lung
• inferior lobe of left lung

heart

• right atrium
• left atrium
• atrial septum
• ventricular septum
• right ventricle of heart
• left ventricle of heart
• mitral valve
• tricuspid valve
• aortic valve
• pulmonary valve

pericardium

• pericardial cavity

skeleton of thorax

• thoracic vertebral column
• ribs
• sternum
• right clavicle
• left clavicle

abdomen

soft tissue of abdomen

contents of abdominal cavity

• peritoneum
  • omentum
  • peritoneal cavity
• retroperitoneal space
• stomach
• duodenum
• small bowel
• colon
  • anus
• liver
• biliary tree
• gallbladder
• pancreas
• spleen
• urinary system
  • right kidney
  • left kidney
  • right ureter
  • left ureter
  • urinary bladder
  • urethra
• right adrenal gland
• left adrenal gland
• female internal genitalia
  • uterus
  • right fallopian tube
  • left fallopian tube
  • right ovary
  • left ovary
  • vagina
• male internal genitalia
  • prostate
  • right seminal vesicle
  • left seminal vesicle
  • right deferent duct
  • left deferent duct

peripheral nervous system

• autonomic nerve
• sympathetic trunk
• cranial nerves
• vagus nerve
• peripheral nerve

foreign objects

• needle
• probe

segmentation regions

• background
• unsegmented region
• user defined regions
  • region 1
  • region 2
  • region 3
  • region 4
  • region 5
  • region 6
  • region 7
  • region 8
  • region 9
  • region 10
  • region 12
  • region 13
  • region 14
  • region 15
  • region 16