Difference between revisions of "Modules:ResampleScalarVectorDWIVolume-Documentation-3.6"

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== More Information ==  
 
== More Information ==  
 +
 +
===When Using the module in command line===
 +
* The Transform can be given through an ITK Transform file. An example is given below.
 +
#Insight Transform File V1.0
 +
# Transform 0
 +
Transform: AffineTransform_double_3_3
 +
Parameters: 1.73205080756880 0.5 0 -0.5 .8660254037844 0 0 0 1.5 15 32 27
 +
FixedParameters: 40 35 20
 +
 +
* '''Be Careful :''' The transform file must have an empty line after the fixed parameters
 +
* The Fixed Parameters are the coordinates of the center of rotation
 +
* The Parameters are written in the following format:
 +
** The first 9 numbers represent a linear transformation matrix in column-major order (where the column index varies the fastest)
 +
** The last 3 are a translation.
 +
* A transform file may contain multiple transforms. The module will apply all of them.
  
 
===Acknowledgment===
 
===Acknowledgment===

Revision as of 15:26, 26 March 2010

Home < Modules:ResampleScalarVectorDWIVolume-Documentation-3.6

Return to Slicer 3.6 Documentation

Gallery of New Features


Resample Scalar/Vector/DWI Volume

Module with panels expanded
Original Image [1]
Transformed Image

General Information

Module Type & Category

Type: Interactive or CLI

Category: Base or (Filtering, Registration, etc.)

Authors, Collaborators & Contact

  • Author1: Affiliation & logo, if desired
  • Contributor1: Affiliation & logo, if desired
  • Contributor2: Affiliation & logo, if desired
  • Contact: name, email

Module Description

Overview of what the module does goes here.

Usage

Examples, Use Cases & Tutorials

  • Note use cases for which this module is especially appropriate, and/or link to examples.
  • Link to examples of the module's use
  • Link to any existing tutorials

Quick Tour of Features and Use

List all the panels in your interface, their features, what they mean, and how to use them. For instance:

  • Input panel:
  • Parameters panel:
  • Output panel:
  • Viewing panel:

Development

Dependencies

The module uses some source code present in the ResampleDTI module repository.

Known bugs

Follow this link to the Slicer3 bug tracker.


Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Customize following links for your module:

Source code:

Source code from ResampleDTI

Doxygen documentation:

More Information

When Using the module in command line

  • The Transform can be given through an ITK Transform file. An example is given below.
#Insight Transform File V1.0
# Transform 0
Transform: AffineTransform_double_3_3
Parameters: 1.73205080756880 0.5 0 -0.5 .8660254037844 0 0 0 1.5 15 32 27
FixedParameters: 40 35 20
  • Be Careful : The transform file must have an empty line after the fixed parameters
  • The Fixed Parameters are the coordinates of the center of rotation
  • The Parameters are written in the following format:
    • The first 9 numbers represent a linear transformation matrix in column-major order (where the column index varies the fastest)
    • The last 3 are a translation.
  • A transform file may contain multiple transforms. The module will apply all of them.

Acknowledgment

This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on the National Centers for Biomedical Computing can be obtained from http://nihroadmap.nih.gov/bioinformatics.

References

ITK software guide. Sections "6.9 Geometric Transformations", "8.8 Transforms" and "8.9 Interpolators".

[1] BrainWeb: Simulated Brain Database

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