Difference between revisions of "Documentation"

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=Introduction=
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<noinclude>{{documentation/versioncheck}}</noinclude>
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[[Image:Base-Features-and-Modules.png|thumb|right|overview]]
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__NOTOC__
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This page is a portal for documentation about Slicer 3.
 
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For information for software developers, please go to the Developers page (see link in navigation box to the left).
 
  
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*With the distribution of slicer3 there will be a set of bundled modules to get people started.  The exact composition of the bundled modules hasn't been finalized, but it will be similar to the current set of modules that are built in.  There may be different application-specific bundles that can optionally be loaded.  E.g. a registration bundle, an IGT bundle, a diffusion bundle, etc.
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{{Infobox
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|name        = 3D Slicer {{documentation/version}}
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|above        = 3D Slicer
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|abovestyle  =
  
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For NITRC modules the work is still in-progress. Active work (02/2008):
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|image        = [[File:3DSlicer41Logo-H-218X144.png|218px|alt=3D Slicer {{documentation/version}}]]
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*Sebastien is working on being able to build modules based on a configuration file.  
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|imagestyle  =
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*Terry Lorber is working on having slicer3 detect and load modules that it finds locally. 
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|headerstyle = background:#E7DCC3;
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*Once these are done Terry will look at how to download and install new modules from places like NITRC.
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|labelstyle  =
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|datastyle    =
  
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=How-To Tutorials=
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|header1 = Description
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[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:Slicer3_Training Slicer3 tutorial page]
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|label1  =
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|data1  =
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|header2 =
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|label2  =
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|data2  = Research platform for the analysis and visualization of medical images, including image guided therapy.
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|header3 =
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|label3  =
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|data3  = Free and extensible open source package.
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|header4 =
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|label4  = Multi-platform
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|data4  = Linux, MacOSX, Windows
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|header5 =
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|label5  = Version
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|data5  = {{documentation/currentversion}}
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|header6 =
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|label6  = License
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|data6  = [http://www.slicer.org/pages/LicenseText Contribution and Software License Agreement]
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}}
  
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=Modules=
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==Slicer 4==
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Please copy the template linked below, paste it into your page and customize it with your module's information.
 
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[[Slicer3:Module_Documentation_Template|Slicer3:Module_Documentation_Template]]
 
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==Core Modules==
 
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*[[Modules:Hotkeys-Documentation| List of Hotkeys and Keyboard Shortcuts]]
 
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*[[Modules:MainApplicationGUI-Documentation| Main Application GUI]]
 
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*[[Modules:Saving-Documentation| Save Scene and Data Module]]
 
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*[[Modules:Data-Documentation| Data Module]]
 
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*[[Modules:Volumes-Documentation| Volumes Module]]
 
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*[[Modules:DTMRI-Documentation| DTMRI Infrastructure]]
 
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*[[Modules:Volumes:Diffusion Editor-Documentation| Diffusion Editor]]
 
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*[[Modules:Models-Documentation| Models Module]]
 
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*[[Modules:Modelmaker-Documentation| Modelmaker]]
 
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*[[Modules:Transforms-Documentation| Transforms Module]]
 
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*[[Modules:Fiducials-Documentation| Fiducials Module]]
 
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*[[Modules:VolumeRendering-Documentation| Volume Rendering Module]]
 
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*[[Modules:Edit-Box-Documentation| Edit Box Module]]
 
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*[[Modules:Editor-Documentation| Interactive Editor]]
 
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*[http://wiki.na-mic.org/Wiki/index.php/Slicer3:Module:QueryAtlas Query Atlas]
 
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*[[Modules:EM-Segmenter-Documentation|EM Segementer]]
 
  
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==CLI Modules==
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*[[Documentation/Nightly|Nightly]]
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*[[Modules:OtsuThresholding-Documentation|Otsu Thresholding]]
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<!-- NEXT RELEASE -->
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*[[Modules:StochasticTractography-Documentation|Stochastic Tractography]]
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*[[Documentation/4.10|4.10]] / [[Documentation/4.10/ReleaseNotes|Release notes]] / [[Documentation/4.10/Announcements | Announcement]] / [[Documentation/4.10/Acknowledgments | Acknowledgments]]
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*[[Modules:LinearRegistration-Documentation|Linear Registration (aka rigid registration)]]
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*[[Documentation/4.8|4.8]] / [[Documentation/4.8/ReleaseNotes|Release notes]] / [[Documentation/4.8/Announcements | Announcement]] / [[Documentation/4.8/Acknowledgments | Acknowledgments]]
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*[[Modules:AffineRegistration-Documentation|Affine Registration]]
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*[[Documentation/4.6|4.6]] / [[Documentation/4.6/ReleaseNotes|Release notes]] / [[Documentation/4.6/Announcements | Announcement]] / [[Documentation/4.6/Acknowledgments | Acknowledgments]]
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*[[Slicer3:Module:Deformable_BSpline_registration|B-Spline Registration]]
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*[[Documentation/4.5|4.5]] / [[Documentation/4.5/ReleaseNotes|Release notes]] / [[Documentation/4.5/Announcements | Announcement]] / [[Documentation/4.5/Acknowledgments | Acknowledgments]]
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*[[Documentation/4.4|4.4]] / [[Documentation/4.4/ReleaseNotes|Release notes]] / [[Documentation/4.4/Announcements | Announcement]] / [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
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*[[Documentation/4.3|4.3]] / [[Documentation/4.3/ReleaseNotes|Release notes]] / [[Documentation/4.3/Announcements | Announcement]] / [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
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*[[Documentation/4.2|4.2]] / [[Documentation/4.2/ReleaseNotes|Release notes]] / [[Documentation/4.2/Announcements | Announcement]] / [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
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*[[Documentation/4.1|4.1]] / [[Documentation/4.1/ReleaseNotes|Release notes]] / [[Documentation/4.1/Announcements | Announcement]] / [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
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*[[Documentation/4.0|4.0]] / [[Documentation/4.0/ReleaseNotes|Release notes]] / [[Documentation/4.0/Announcements | Announcement]] / [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
  
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==Modules on NITRC==
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<font color="#669"><small>Acknowledgments are now reported separately for each version.</small></font>
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We are using NITRC as a repository for contributed modules. As a general rule, we do not test them ourselves, it is the downloaders job to ensure that they do what they want them to do.
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<!--
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<font color="#669"><small>The community contributing to Slicer 4 is acknowledged [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 here]</small></font>
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-->
  
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Click [http://www.nitrc.org/search/?type_of_search=soft&words=slicer3&Search.x=0&Search.y=0&Search=Search  here] to see a listing of Slicer 3 modules on NITRC.
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==Slicer 3==
  
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*[[Documentation/3.6|3.6]] / [[Documentation/3.6/ReleaseNotes|Release notes]] / [[Announcements:Slicer3.6 | Announcement]]
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*[[Documentation/3.5|3.5]]
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*[[Documentation/3.4|3.4]] / [[Documentation/3.4/ReleaseNotes|Release notes]] / [[Announcements:Slicer3.4 | Announcement]]
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*[[Documentation/3.2|3.2]] / [[Documentation/3.2/ReleaseNotes|Release notes]]
  
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==Problems and Feature Request==
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<font color="#669"><small>The community contributing to Slicer 3 is acknowledged [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer3 here]</small></font>
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We have an issues [http://www.na-mic.org/Bug/my_view_page.php tracker] for Slicer 3. You need to create an account for filing reports. We keep track of both feature requests and bug reports. Make sure to use the pull-down in the upper right to select Slicer 3.
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==Slicer 2==
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*[[Slicer:Slicer2.7_Getting_Started|2.7]] / [[Slicer:Slicer2.7_Release_Notes|Release notes]]
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*[[Slicer:Slicer2.6_Getting_Started|2.6]] / [[Slicer:Slicer2.6_Release_Notes|Release notes]]
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*[[Slicer:Slicer2.5_Getting_Started|2.5]] / [[Slicer:Slicer2.5_Release_Notes|Release notes]]
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*[[Slicer:Slicer2.4_Getting_Started|2.4]] / [[Slicer:Slicer2.4_Release_Notes|Release notes]]
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<font color="#669"><small>The community contributing to Slicer 2 is acknowledged [http://www.slicer.org/pages/Acknowledgments#Slicer2:_Individual.2FGroup_Contributors here]</small></font>
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==Slicer 1==
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*[https://web.archive.org/web/20130205161603/https://www.slicer.org/archives/download/index.html 1.3] / [http://massmail.spl.harvard.edu/public-archives/slicer-users/2002/000145.html Announcement]
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<hr />
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<center>[[Image:Slicer4Announcement-HiRes.png|350px]]</center>
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<!--
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[[Image:AppGUIMap.png|400px]]
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Latest revision as of 21:15, 19 January 2022

Home < Documentation


For the latest Slicer documentation, visit the read-the-docs.



3D Slicer
3D Slicer
Description
Research platform for the analysis and visualization of medical images, including image guided therapy.
Free and extensible open source package.
Multi-platform Linux, MacOSX, Windows
Version 4.10
License Contribution and Software License Agreement
v · d · e

Slicer 4

Acknowledgments are now reported separately for each version.

Slicer 3

The community contributing to Slicer 3 is acknowledged here

Slicer 2

The community contributing to Slicer 2 is acknowledged here

Slicer 1


Slicer4Announcement-HiRes.png
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