Difference between revisions of "Documentation/Nightly/2016-User-Manual-Discussion"

From Slicer Wiki
Jump to: navigation, search
 
(72 intermediate revisions by 5 users not shown)
Line 1: Line 1:
 +
<noinclude><!--{{documentation/versioncheck}}--></noinclude>
 
__NOTOC__
 
__NOTOC__
 +
<!--{{documentation/versionlist}}-->
 +
 +
3D Slicer
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
|-
 
|-
Line 8: Line 12:
 
|valign="top"|
 
|valign="top"|
 
----
 
----
−
<span style="color: #555555; font-size: 18px; font-weight: bold;">3D Slicer</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
−
* A software platform for the interactive analysis and visualization of medical images
+
* Analysis and visualization of medical images
−
* A platform for research in image guided therapy.
+
* Image guided therapy research, device interfaces.
−
* An extensible free, open source software available on multiple operating systems
+
* Extensible, free, open source. See [https://www.slicer.org/pages/LicenseText here] for the license
  
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
 
|valign="top"|
 
|valign="top"|
 
----
 
----
−
<span style="color: #555555; font-size: 18px; font-weight: bold;">Highlights</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
 +
* Designed for biomedical research
 
* Multi organ capability: from head to toe.
 
* Multi organ capability: from head to toe.
−
* Support for multi-modality imaging including, MRI, CT, US, nuclear medicine, and microscopy.
+
* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
−
* Interfaces to devices.
 
 
|}
 
|}
−
 
−
3D Slicer is intended for research and is not approved for clinical use. Compliance with rules is the responsibility of the user. For the full license see [[ insert link to license| here]]
 
−
 
−
 
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 
|-
 
|-
−
! width="33%"|
+
! width="50%"|
 
! |
 
! |
−
! width="33%"|
+
! width="50%"|
−
! |
 
−
! width="33%"|
 
 
|-  
 
|-  
 
|valign="top"|
 
|valign="top"|
Line 39: Line 37:
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
----
 
----
−
* [[ link to Training pages|Information on how to use 3D Slicer]]
+
* [[ New_users|Getting started]]
−
* [[link to FAQ|Frequently asked questions]]
+
* [[ Documentation/{{documentation/version}}/Training|Self-Training: Tutorials and sample data]]
−
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Mailing list for users of 3D Slicer] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] <br> [http://slicer-users.65878.n3.nabble.com/ Search the mailing list archives]
+
* [[FAQ|Frequently asked questions]]
−
* [[Link to report a problem page|Report a problem or request a feature (edit that page accordingly, aimed at end users, not developers)]]
+
* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] / [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users Sign-up]
 +
* How to [[CitingSlicer|cite 3D Slicer and individual 3D Slicer Modules]]  
 
----
 
----
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
----
 
----
−
* A [[tour through the main window of 3D Slicer]]
+
* [[Documentation/{{documentation/version}}/SlicerApplication/Installation|Installation]]
−
* [[Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
+
* A [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI|tour through the main window of 3D Slicer]]
−
* Where to modify [[settings]] and where they are [[stored]] (refers to the Edit/Appplication Settings pop up panel)
+
* [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Layouts|Layouts]], [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#3D_Viewer|3D Viewers]], and [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Slice_Viewers|Slice Viewers]]
−
* [[Hardware requirements]]
+
* [[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts|Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
−
* [[Link to portal page about loading data|Loading]], [[Saving data]] and [[listing of supported data formats]].
+
* Where to modify [[Documentation/{{documentation/version}}/SlicerApplication/ApplicationSettings#Overview|settings]]
 +
* [[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration|Hardware requirements]]
 +
*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]].
 +
<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
 +
 
 +
----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 +
----
 +
* [http://slicerdmri.github.io/  Interactive tractography using diffusion MRI data]
 +
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT | Slicer IGT]]
 +
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT | Slicer RT]]
  
  
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
 
|valign="top"|
 
|valign="top"|
 +
 
----
 
----
−
<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Modules</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Functions</span>
 
----
 
----
 +
{| class="wikitable"
 +
| [[image:Load-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/LoadingData| To add data, just drag and drop]]
 +
| [[image:Save-Icon-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/SavingData| To save data, select the save icon]]
 +
|-
 +
| [[Image:2016-07-03-Interactive-Editor-Icon.png|100 px| link=Link to Editor module |Interactive segmentation]] 
 +
| [[image:Editor-panel.png|100px|link=https://www.youtube.com/watch?v=MKLWzD0PiIc| Interactive Segmentation (at 14 minutes)]]
 +
|-
 +
| [[Image:2016-07-03-Transforms-Module-Icon.png|100 px|link=Documentation/Nightly/Modules/Transforms|Interactive registration]]
 +
| [[Image:Grid3dVolume.png|100px|link=https://www.youtube.com/watch?v=kZUAfR0mqqI| Demo of the transforms display feature]]
 +
|-
 +
| [[Image:SlicerRegistrationLibrary_Ad.png|100px|link=Documentation/Nightly/Registration/RegistrationLibrary|Registration library]]
 +
| [[Image:VolumeRendering-CTA-2011.png|100 px|link=Documentation/Nightly/Modules/VolumeRendering | Volume rendering]]
 +
|-
 +
| [[Image:Fiducial-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Markups| Fiducials]]
 +
| [[Image:Ruler-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Annotations| Linear Measurements]]
 +
|}
  
−
* [[Link to the editor page|Interactive segmentation]] and [[link to the proper page| manual]] and [[link to the proper page|editor extensions]]
+
|}
−
* Registration:
 
−
** [[Link to the transform module|Interactive registration]] and [[link to the proper page| manual]]
 
−
** [[Link to the brainsfit page| Automated registration]] and [[link to the proper page| a library of example solutions]]
 
−
* [[Link to the volume rendering page | Volume rendering]] and [[link to the proper page| Volume rendering tutorial]]
 
−
* [[Link to the fiducials page | Fiducials]] and [[link to the linear measurements page| Linear Measurements]]
 
  
−
----
+
* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
−
<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
+
* Listing in two columns:
−
----
+
** Alphabetic list of modules
−
* [[Link to the proper page | Interactive tractography of diffusion MRI data]]  
+
** Alphabetic list of extensions
−
* [[Link to the proper page | Slicer IGT]]
 
−
* [[Link to the proper page | Slicer RT]]
 
  
−
|bgcolor="#CCCCCC"|
+
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
 +
|-
 +
! width="50%"|
 +
! |
 +
! width="50%"|
 +
|-
 
|valign="top"|
 
|valign="top"|
−
 
  
 
----
 
----
Line 85: Line 108:
 
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
−
* Slicer Lookup Tables
+
* [[Documentation/{{documentation/version}}/SlicerApplication/LookupTables | Slicer Lookup Tables]]
−
* Setting up and using stereoscopic viewing
+
* [[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]
−
* QtTesting - Easy way to record and play macros
+
* [[Documentation/{{documentation/version}}/SlicerApplication/QtTesting |  QtTesting - Easy way to record and play macros]]
  
  
Line 94: Line 117:
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
----
 
----
−
* [[Link to the appropriate language page | Español]]
+
{{:Documentation/{{documentation/version}}/Lang/ES}}
−
 
 
 
|}
 
|}
−
* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
 
−
* Listing in two columns:
 
−
** Alphabetic list of modules
 
−
** Alphabetic list of extensions
 

Latest revision as of 14:20, 11 August 2016

Home < Documentation < Nightly < 2016-User-Manual-Discussion


3D Slicer

  • Analysis and visualization of medical images
  • Image guided therapy research, device interfaces.
  • Extensible, free, open source. See here for the license

  • Designed for biomedical research
  • Multi organ capability: from head to toe.
  • Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.

Where to start ?

The Basics

Advanced Topics


Core Functions

To add data, just drag and drop To save data, select the save icon
Interactive segmentation Interactive Segmentation (at 14 minutes)
Error creating thumbnail: Unable to save thumbnail to destination
 Demo of the transforms display feature
Registration library Volume rendering
Fiducials Linear Measurements

Miscellaneous


Documentation in other languages

Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/Nightly/2016-User-Manual-Discussion&oldid=46831"