Difference between revisions of "Documentation/Nightly/2016-User-Manual-Discussion"

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<noinclude><!--{{documentation/versioncheck}}--></noinclude>
 
__NOTOC__
 
__NOTOC__
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<!--{{documentation/versionlist}}-->
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3D Slicer
 
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----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">3D Slicer</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
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* A software platform for the analysis (including registration and interactive segmentation) and visualization (including volume rendering) of medical images and for research in image guided therapy.
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* Analysis and visualization of medical images
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* A free, open source software available on multiple operating systems: Linux, MacOSX and Windows
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* Image guided therapy research, device interfaces.
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* Extensible, with powerful plug-in capabilities for adding algorithms and applications.
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* Extensible, free, open source. See [https://www.slicer.org/pages/LicenseText here] for the license
  
 
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----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Some Features</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;"> </span>
 
----
 
----
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* Designed for biomedical research
 
* Multi organ capability: from head to toe.
 
* Multi organ capability: from head to toe.
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* Support for multi-modality imaging including, MRI, CT, US, nuclear medicine, and microscopy.
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* Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.
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* Interfaces to devices.
 
 
|}
 
|}
−
 
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There are no restrictions on the use of 3D Slicer, but 3D Slicer is not approved for clinical use and is intended for research. Permissions and compliance with applicable rules are the responsibility of the user. For details on the license see [[ insert link to license| license link]]here
 
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−
 
 
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
----
 
----
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* [[ link to Training pages|Information on how to use 3D Slicer]]
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* [[ New_users|Getting started]]
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* [[link to FAQ|Frequently asked questions]]
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* [[ Documentation/{{documentation/version}}/Training|Self-Training: Tutorials and sample data]]
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* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Mailing list for users of 3D Slicer] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] <br> [http://slicer-users.65878.n3.nabble.com/ Search the mailing list archives]
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* [[FAQ|Frequently asked questions]]
−
* [[Link to report a problem page|Report a problem or request a feature (edit that page accordingly, aimed at end users, not developers)]]
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* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] / [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users Sign-up]
 +
* How to [[CitingSlicer|cite 3D Slicer and individual 3D Slicer Modules]]  
 
----
 
----
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">The Basics</span>
 
----
 
----
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* A [[tour through the main window of 3D Slicer]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/Installation|Installation]]
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* [[Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
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* A [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI|tour through the main window of 3D Slicer]]
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* Where to modify [[settings]] and where they are [[stored]] (refers to the Edit/Appplication Settings pop up panel)
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* [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Layouts|Layouts]], [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#3D_Viewer|3D Viewers]], and [[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI#Slice_Viewers|Slice Viewers]]
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* [[Hardware requirements]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts|Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
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* [[Link to portal page about loading data|Loading]], [[Saving data]] and [[listing of supported data formats]].
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* Where to modify [[Documentation/{{documentation/version}}/SlicerApplication/ApplicationSettings#Overview|settings]]
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* [[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration|Hardware requirements]]
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*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]].
 +
<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
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 +
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 +
----
 +
* [http://slicerdmri.github.io/  Interactive tractography using diffusion MRI data]
 +
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT | Slicer IGT]]
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* [[Documentation/{{documentation/version}}/Extensions/SlicerRT | Slicer RT]]
  
  
 
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----
 
----
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Modules</span>
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Core Functions</span>
 
----
 
----
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The short list of modules and functionality
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{| class="wikitable"
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| [[image:Load-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/LoadingData| To add data, just drag and drop]]
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| [[image:Save-Icon-2016-08-11.png|100px|link=Documentation/Nightly/SlicerApplication/SavingData| To save data, select the save icon]]
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|-
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| [[Image:2016-07-03-Interactive-Editor-Icon.png|100 px| link=Link to Editor module |Interactive segmentation]] 
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| [[image:Editor-panel.png|100px|link=https://www.youtube.com/watch?v=MKLWzD0PiIc| Interactive Segmentation (at 14 minutes)]]
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|-
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| [[Image:2016-07-03-Transforms-Module-Icon.png|100 px|link=Documentation/Nightly/Modules/Transforms|Interactive registration]]
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| [[Image:Grid3dVolume.png|100px|link=https://www.youtube.com/watch?v=kZUAfR0mqqI| Demo of the transforms display feature]]
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|-
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| [[Image:SlicerRegistrationLibrary_Ad.png|100px|link=Documentation/Nightly/Registration/RegistrationLibrary|Registration library]]
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| [[Image:VolumeRendering-CTA-2011.png|100 px|link=Documentation/Nightly/Modules/VolumeRendering | Volume rendering]]
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|-
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| [[Image:Fiducial-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Markups| Fiducials]]
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| [[Image:Ruler-2016-08-11.png|100px|link=Documentation/Nightly/Modules/Annotations| Linear Measurements]]
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|}
  
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* [[Link to the editor page|Interactive segmentation]] and [[link to the proper page| manual]] and [[link to the proper page|editor extensions]]
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|}
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* Registration:
 
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** [[Link to the transform module|Interactive registration]] and [[link to the proper page| manual]]
 
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** [[Link to the brainsfit page| Automated registration]] and [[link to the proper page| a library of example solutions]]
 
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* [[Link to the volume rendering page | Volume rendering]] and [[link to the proper page| Volume rendering tutorial]]
 
−
* [[Link to the fiducials page | Fiducials]] and [[link to the linear measurements page| Linear Measurements]]
 
  
 +
* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
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* Listing in two columns:
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** Alphabetic list of modules
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** Alphabetic list of extensions
  
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|-
 
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|valign="top"|
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----
 
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Advanced Topics</span>
 
−
----
 
−
* [[Link to the proper page | Interactive tractography of diffusion MRI data]]
 
−
* [[Link to the proper page | Slicer IGT]]
 
−
* [[Link to the proper page | Slicer RT]]
 
  
 
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* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes: Platform specific issues and considerations]]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
 
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
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* Slicer Lookup Tables
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* [[Documentation/{{documentation/version}}/SlicerApplication/LookupTables | Slicer Lookup Tables]]
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* Setting up and using stereoscopic viewing
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* [[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]
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* QtTesting - Easy way to record and play macros
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* [[Documentation/{{documentation/version}}/SlicerApplication/QtTesting |  QtTesting - Easy way to record and play macros]]
  
  
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<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages </span>
 
----
 
----
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* [[Link to the appropriate language page | Español]]
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{{:Documentation/{{documentation/version}}/Lang/ES}}
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|}
 
|}
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* [[search box right here|Search for a module in this version of Slicer (including extensions)]]
 
−
* Listing in two columns:
 
−
** Alphabetic list of modules
 
−
** Alphabetic list of extensions
 

Latest revision as of 14:20, 11 August 2016

Home < Documentation < Nightly < 2016-User-Manual-Discussion


3D Slicer

  • Analysis and visualization of medical images
  • Image guided therapy research, device interfaces.
  • Extensible, free, open source. See here for the license

  • Designed for biomedical research
  • Multi organ capability: from head to toe.
  • Multi-modality imaging: MRI, CT, US, nuclear medicine, and microscopy.

Where to start ?

The Basics

Advanced Topics


Core Functions

To add data, just drag and drop To save data, select the save icon
Interactive segmentation Interactive Segmentation (at 14 minutes)
Interactive registration Demo of the transforms display feature
Registration library Volume rendering
Fiducials Linear Measurements

Miscellaneous


Documentation in other languages

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