Difference between revisions of "Documentation/Nightly/Modules/DoseComparison"
From Slicer Wiki
m (Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 12: | Line 12: | ||
Contributor: Greg Sharp (Massachusetts General Hospital)<br> | Contributor: Greg Sharp (Massachusetts General Hospital)<br> | ||
Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br> | Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br> | ||
| − | [ | + | [[Documentation/Nightly/Extensions/SlicerRT|Back to SlicerRT home]] |
{{documentation/{{documentation/version}}/module-introduction-row}} | {{documentation/{{documentation/version}}/module-introduction-row}} | ||
{{documentation/{{documentation/version}}/module-introduction-logo-gallery | {{documentation/{{documentation/version}}/module-introduction-logo-gallery | ||
| Line 36: | Line 36: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Tutorials}} | {{documentation/{{documentation/version}}/module-section|Tutorials}} | ||
| − | See [ | + | See [[Documentation/Nightly/Extensions/SlicerRT#Tutorials|SlicerRT main page]] |
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Panels and their use}} | {{documentation/{{documentation/version}}/module-section|Panels and their use}} | ||
| − | * Reference dose volume: Dose distribution used as reference | + | * '''Reference dose volume:''' Dose distribution used as reference |
| − | * Evaluated dose volume: Dose distribution used as evaluation/compare | + | * '''Evaluated dose volume:''' Dose distribution used as evaluation/compare |
| − | * Mask structure: Segmentation and contained segment | + | * '''Mask structure:''' Segmentation and contained segment within which the gamma index is calculated, but not outside (it will be 0) |
| − | * Distance-to-agreement (DTA): Mark dose voxel as failed if closest dose voxel with same value found in distance higher than this threshold, see Low paper below | + | * '''Distance-to-agreement (DTA):''' Mark dose voxel as failed if closest dose voxel with same value found in distance higher than this threshold, ''see Low paper below'' |
| − | * Dose difference criteria: Mark dose voxel as failed if dose difference is equal or greater than this threshold, see Low paper below | + | * '''Dose difference criteria:''' Mark dose voxel as failed if dose difference is equal or greater than this threshold, ''see Low paper below'' |
| − | ** Maximum value / Custom: Reference dose value for threshold can be either the maximum dose in the dose map, or a custom cGy value | + | ** '''Maximum value / Custom:''' Reference dose value for threshold can be either the maximum dose in the dose map, or a custom cGy value |
| − | * Do not calculate gamma values for voxels below | + | * '''Do not calculate gamma values for voxels below analysis threshold''' |
| − | * Use linear interpolation | + | * '''Use linear interpolation''' |
| − | * Upper bound for gamma values: If gamma value would be higher than this value, the value will be set instead | + | * '''Upper bound for gamma values:''' If gamma value would be higher than this value, the value will be set instead |
* Dose threshold on reference only | * Dose threshold on reference only | ||
| − | * Gamma volume: Output volume to contain gamma map. Needs to be created using the combobox. Name will be automatically filled from the names of the input volumes | + | * '''Gamma volume:''' Output volume to contain gamma map. Needs to be created using the combobox. Name will be automatically filled from the names of the input volumes |
<!-- | <!-- | ||
{{documentation/{{documentation/version}}/module-parametersdescription}} | {{documentation/{{documentation/version}}/module-parametersdescription}} | ||
| Line 57: | Line 57: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|Similar Modules}} | {{documentation/{{documentation/version}}/module-section|Similar Modules}} | ||
| − | [ | + | [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]] |
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-section|References}} | {{documentation/{{documentation/version}}/module-section|References}} | ||
| − | * Low, D. A.; Harms, W. B.; Mutic, S. & Purdy, J. A. A technique for the quantitative evaluation of dose distributions Med. Phys, 1998, 25 (5), 656/6 | + | * General information about the algorithm |
| − | * Low, D. A. & Dempsey, J. F. Evaluation of the gamma dose distribution comparison method Med. Phys, 2003, 30 (9), 2455/10 | + | ** Low, D. A.; Harms, W. B.; Mutic, S. & Purdy, J. A. A technique for the quantitative evaluation of dose distributions Med. Phys, 1998, 25 (5), 656/6 |
| + | ** Low, D. A. & Dempsey, J. F. Evaluation of the gamma dose distribution comparison method Med. Phys, 2003, 30 (9), 2455/10 | ||
| + | * Cross-validation of the SlicerRT gamma calculation algorithm | ||
| + | ** [http://perk.cs.queensu.ca/sites/perkd7.cs.queensu.ca/files/Alexander2015_AAPM_Gamma.pdf Alexander, K. M., Jechel, C., Pinter, C., Salomons, G., Lasso, A., Fichtinger, G., & Schreiner, L. J. (2015). SU‐E‐T‐231: Cross‐Validation of 3D Gamma Comparison Tools. Medical physics, 42(6Part15), 3385-3385.] | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
Latest revision as of 02:34, 27 November 2019
Home < Documentation < Nightly < Modules < DoseComparison
|
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
|
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. | |||||||
|
Module Description
The DoseComparison module computes the difference between two co-registered dose volumes using the gamma dose distribution comparison method. This module uses the gamma Plastimatch algorithm internally.
Use Cases
Comparing dose distributions
Tutorials
Panels and their use
- Reference dose volume: Dose distribution used as reference
- Evaluated dose volume: Dose distribution used as evaluation/compare
- Mask structure: Segmentation and contained segment within which the gamma index is calculated, but not outside (it will be 0)
- Distance-to-agreement (DTA): Mark dose voxel as failed if closest dose voxel with same value found in distance higher than this threshold, see Low paper below
- Dose difference criteria: Mark dose voxel as failed if dose difference is equal or greater than this threshold, see Low paper below
- Maximum value / Custom: Reference dose value for threshold can be either the maximum dose in the dose map, or a custom cGy value
- Do not calculate gamma values for voxels below analysis threshold
- Use linear interpolation
- Upper bound for gamma values: If gamma value would be higher than this value, the value will be set instead
- Dose threshold on reference only
- Gamma volume: Output volume to contain gamma map. Needs to be created using the combobox. Name will be automatically filled from the names of the input volumes
Similar Modules
References
- General information about the algorithm
- Low, D. A.; Harms, W. B.; Mutic, S. & Purdy, J. A. A technique for the quantitative evaluation of dose distributions Med. Phys, 1998, 25 (5), 656/6
- Low, D. A. & Dempsey, J. F. Evaluation of the gamma dose distribution comparison method Med. Phys, 2003, 30 (9), 2455/10
- Cross-validation of the SlicerRT gamma calculation algorithm
Information for Developers
N/A
