Difference between revisions of "Documentation/Nightly/Extensions/DTI-Reg"
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DTI-Reg is an extension that performs pair-wise DTI registration, using scalar FA map to drive the registration.<br> | DTI-Reg is an extension that performs pair-wise DTI registration, using scalar FA map to drive the registration.<br> | ||
| − | Individual steps of the pair-wise registration pipeline are performed via external applications - some of them being 3D Slicer modules. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit/BRAINSDemonWarp or ANTS -Advanced Normalization Tools-, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via | + | Individual steps of the pair-wise registration pipeline are performed via external applications - some of them being 3D Slicer modules. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit/BRAINSDemonWarp or ANTS -Advanced Normalization Tools-, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via ResampleDTIlogEuclidean.<br> |
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{{documentation/{{documentation/version}}/module-section|Use Cases}} | {{documentation/{{documentation/version}}/module-section|Use Cases}} | ||
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| + | |[[Image:DTI-Reg - Misaligned DTIs.png|thumb|286px|Misaligned Diffusion Tensor Images]] | ||
| + | |[[Image:DTI-Reg - Aligned DTIs - Coronal.png|thumb|700px|Aligned DTIs]] | ||
| + | |} | ||
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{{documentation/{{documentation/version}}/module-section|Similar Modules}} | {{documentation/{{documentation/version}}/module-section|Similar Modules}} | ||
| + | See [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] and [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]]. | ||
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Latest revision as of 20:54, 15 June 2015
Home < Documentation < Nightly < Extensions < DTI-Reg
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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Extension: DTI-Reg | |||||||||
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Module Description
DTI-Reg is an extension that performs pair-wise DTI registration, using scalar FA map to drive the registration.
Individual steps of the pair-wise registration pipeline are performed via external applications - some of them being 3D Slicer modules. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit/BRAINSDemonWarp or ANTS -Advanced Normalization Tools-, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via ResampleDTIlogEuclidean.
Use Cases
Tutorials
A tutorial can be found here
Panels and their use
Similar Modules
See ResampleDTIlogEuclidean and DTIAtlasBuilder.
References
Information for Developers
The source code of DTI-Reg is available on GitHub. It is published under an Apache License v2.0.
