Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List/Nightly/ModuleExtensionListing"
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=== Editor Extensions === | === Editor Extensions === | ||
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| − | * [ | + | * [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small> |
* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
| Line 190: | Line 190: | ||
<span id='Modules_by_category_Examples'></span> | <span id='Modules_by_category_Examples'></span> | ||
== Examples == | == Examples == | ||
| − | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [ | + | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Fast Grow Cut Segmenter]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small> |
<span id='Modules_by_category_Exporter'></span> | <span id='Modules_by_category_Exporter'></span> | ||
== Exporter == | == Exporter == | ||
| Line 328: | Line 328: | ||
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [ | + | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small> |
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
| Line 371: | Line 371: | ||
<span id='Modules_by_category_Segmentation'></span> | <span id='Modules_by_category_Segmentation'></span> | ||
== Segmentation == | == Segmentation == | ||
| − | * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [ | + | * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> |
* [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | ||
* EMSegment Quick <small>(loadable, built-in)</small> | * EMSegment Quick <small>(loadable, built-in)</small> | ||
| Line 378: | Line 378: | ||
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | * [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> |
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small> | * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small> | * [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small> | ||
| Line 400: | Line 400: | ||
<span id='Modules_by_category_Slicelets'></span> | <span id='Modules_by_category_Slicelets'></span> | ||
== Slicelets == | == Slicelets == | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis Algo]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis]] extension)</small> |
<span id='Modules_by_category_Surface_Models'></span> | <span id='Modules_by_category_Surface_Models'></span> | ||
== Surface Models == | == Surface Models == | ||
| Line 493: | Line 493: | ||
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [ | + | * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> |
* [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 510: | Line 510: | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small> |
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli, built-in)</small> | ||
* [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| Line 564: | Line 564: | ||
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [ | + | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Fast Grow Cut Segmenter]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small> |
* Fiber Bundle Label Select <small>(cli, built-in)</small> | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | ||
| Line 576: | Line 576: | ||
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | * [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | ||
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis Algo]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis]] extension)</small> |
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | ||
| Line 592: | Line 592: | ||
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Isodose|Isodose]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/Isodose|Isodose]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small> |
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 672: | Line 672: | ||
* [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [ | + | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small> |
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | * [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | ||
* [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small> | * [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small> | ||
| Line 703: | Line 703: | ||
* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | * [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
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Latest revision as of 02:40, 27 November 2019
- Modules by category
- Modules by name
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by category
- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
List of extensions known to be broken
Modules by category
36 categories:
- BRAINS
- Cardiac MRI Toolkit
- CMF Registration
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Editor Effect
- Endoscopy
- Examples
- Exporter
- Filtering
- IGT
- Informatics
- Legacy
- Mesh Generation
- Mesh Generation
- Microscopy
- Multi Volume Support
- Perk Tutor
- Plastimatch
- Quantification
- Radiotherapy
- Registration
- Segmentation
- Sequences
- Shape Analysis
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Vascular Modeling Toolkit
- Wizards
- Work in Progress
- XNATSlicer
BRAINS
LabelStatistics
- BRAINSLabel Stats (cli, built-in)
Cardiac MRI Toolkit
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMF Registration
- Apply Matrix (cli, bundled in CMFreg extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
Voxelbase Registration
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
Converters
- Vector To Scalar Volume (scripted, built-in)
- Crop Volume (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Create DICOMSeries (cli, built-in)
Developer Tools
- Event Broker
- Execution Model Tour (cli, built-in)
- Double Arrays (loadable, built-in)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Cameras (loadable, built-in)
- Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
- Extension Wizard (scripted, built-in)
- Image Maker (cli, bundled in Image Maker extension)
DICOM Plugins
- DICOMLongitudinal PETCTPlugin
- DICOMRWVMPlugin
- Multi Volume Importer Plugin
- DICOMPETSUVPlugin
- DICOMDiffusion Volume Plugin
- Dicom Rt Import Export Plugin
- DICOMSegmentation Plugin
- Dicom Sro Import Plugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
Editor Extensions
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Matlab
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Diffusion
- Tractography Display (loadable, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- Resample DTIVolume (cli, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Tractography Interactive Seeding (loadable, built-in)
Diffusion Weighted Images
- DWIRician LMMSEFilter (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Diffusion Weighted Volume Masking (cli, built-in)
FiberAnalysis
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Tractography
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Tract Measurements (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
Editor Effects
- Window Level Effect (scripted, bundled in Window Level Effect extension)
EditorEffect
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Exporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Filtering
- Extract Skeleton (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- N4ITKBias Field Correction (cli, built-in)
- Simple Filters (scripted, built-in)
- Image Label Combine (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Histogram Matching (cli, built-in)
- Checker Board Filter (cli, built-in)
Arithmetic
- Multiply Scalar Volumes (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Mask Scalar Volume (cli, built-in)
Denoising
- Gradient Anisotropic Diffusion (cli, built-in)
- Median Image Filter (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
Morphology
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
IGT
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Open IGTLink IF (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Markups To Model (loadable, bundled in Slicer IGT extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Informatics
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- Sample Data (scripted, built-in)
- Data (loadable, built-in)
- Colors (loadable, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Subject Hierarchy (loadable, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
Legacy
Converters
- BSpline To Deformation Field (cli, built-in)
Diffusion
Denoising
- DWIUnbiased Non Local Means Filter (cli, built-in)
Diffusion Data Conversion
- DTIimport (cli, built-in)
- DTIexport (cli, built-in)
Filtering
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
Registration
- Test Grid Transform Registration (cli, built-in)
- Expert Automated Registration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test (cli, built-in)
Mesh Generation
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
MeshGeneration
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Microscopy
- Bin Shrink (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
MultiVolume Support
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
Perk Tutor
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
Plastimatch
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
Registration
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Utilities
- Plastimatch Py (loadable, bundled in Slicer RT extension)
Quantification
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Label Statistics (scripted, built-in)
- T1 Mapping (scripted, bundled in T1 Mapping extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Data Probe (scripted, built-in)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
ChangeQuantification
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
Radiotherapy
- Beams (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
Registration
- BRAINSResample (cli, built-in)
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- Perform Metric Test (cli, built-in)
- BRAINSFit (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
Label Registration
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Specialized
- ACPCTransform (cli, built-in)
- Fiducial Registration (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
- BRAINSDemon Warp (cli, built-in)
- Reformat (loadable, built-in)
Segmentation
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Editor (scripted, built-in)
- EMSegment Quick (loadable, built-in)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Simple Region Growing Segmentation (cli, built-in)
- EMSegment (loadable, built-in)
- Segment CAD (scripted, bundled in Open CAD extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Wasp (scripted, bundled in Wasp extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Specialized
- EMSegment Command Line (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- BRAINSROIAuto (cli, built-in)
Sequences
- Metafile Importer (loadable, bundled in Sequences extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
Shape Analysis
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Slicelets
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Surface Models
- Model To Label Map (cli, built-in)
- Probe Volume With Model (cli, built-in)
- Merge Models (cli, built-in)
- Surface Toolbox (scripted, built-in)
- Grayscale Model Maker (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Model Maker (cli, built-in)
Testing
- Slicer MRBTest
- Self Tests
- CLIROITest (cli, built-in)
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Performance Tests
IGT Tests
- Watchdog Self Test
- Breach Warning Self Test
TestCases
- Slice Link Logic (scripted, built-in)
- Atlas Tests
- RSNAQuant Tutorial
- Volume Rendering Scene Close (scripted, built-in)
- test tractography display
- slicer Close Crash Bug2590
- Subject Hierarchy Generic Self Test
- Charting (scripted, built-in)
- Scene Performance (scripted, built-in)
- Neurosurgical Planning Tutorial Markups Self Test
- Markups In Compare Viewers Self Test
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
- fiber visibility crash2438
- scene Import2428
- RSNAVis Tutorial
- JRC2013Vis
- RSNA2012Prostate Demo
- Add Many Markups Fiducial Test
- Colors Scalar Bar Self Test
- Markups In Views Self Test
- View Controllers Slice Interpolation Bug1926
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- Subject Hierarchy Core Plugins Self Test
- Slicer4Minute (scripted, built-in)
- Crop Volume Self Test
- label Toggle Bug2049
Unspecified
- BRAINSDWICleanup (cli, built-in)
Utilities
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- BRAINSStrip Rotation (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Data Store (loadable, built-in)
BRAINS
- BRAINSTransform Convert (cli, built-in)
Vascular Modeling Toolkit
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
Wizards
- Compare Volumes (scripted, bundled in CMFreg extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
Work in Progress
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Converters
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Informatics
TestCases
- Reporting Self Test
- Label To DICOMSEGConverter Self Test
XNATSlicer
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by name
212 modules:
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Beams (loadable, bundled in Slicer RT extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Downsize (cli, bundled in CMFreg extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiber Tract Measurements (cli, built-in)
- Fiducial Registration (cli, built-in)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Isodose (loadable, bundled in Slicer RT extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Statistics (scripted, built-in)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Markups To Model (loadable, bundled in Slicer IGT extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Metafile Importer (loadable, bundled in Sequences extension)
- Model Maker (cli, built-in)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Orient Scalar Volume (cli, built-in)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Views (loadable, built-in)
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- T1 Mapping (scripted, bundled in T1 Mapping extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Wasp (scripted, bundled in Wasp extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Welcome (loadable, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
