Difference between revisions of "Documentation/Nightly/Extensions/IntensitySegmenter"
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Author: Francois Budin<br> | Author: Francois Budin<br> | ||
| − | Contributors: Pengdong Xiao (Department of Orthodontics, UNC), Beatriz Paniagua (Department of Orthodontics | + | Contributors: Francois Budin (NIRAL, UNC), Pengdong Xiao (Department of Orthodontics, UNC), Beatriz Paniagua (Department of Orthodontics, UNC)<br> |
Contact: Francois Budin, <email>fbudin@unc.edu</email><br> | Contact: Francois Budin, <email>fbudin@unc.edu</email><br> | ||
Website: https://www.nitrc.org/projects/dentaltools/<br> | Website: https://www.nitrc.org/projects/dentaltools/<br> | ||
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** <span style="color:green">'''rangeFile'''</span> [<span style="color:orange">--rangeFile</span>] [<span style="color:pink">-r</span>]: Input range file used to segment the image. If not specified, uses a default hard coded range that can be saved in a text file using the following option --saveDefaultRangeFile | ** <span style="color:green">'''rangeFile'''</span> [<span style="color:orange">--rangeFile</span>] [<span style="color:pink">-r</span>]: Input range file used to segment the image. If not specified, uses a default hard coded range that can be saved in a text file using the following option --saveDefaultRangeFile | ||
** <span style="color:green">'''saveDefaultRangeFile'''</span> [<span style="color:orange">--saveDefaultRangeFile</span>] [<span style="color:pink">-s</span>]: Save example range file containing 8 labels: air, lungs, soft tissue, fat, water, CSF, blood and muscle, cancellous bone, dense bone. More information about threshold can be found [http://en.wikipedia.org/wiki/Hounsfield_scale here] | ** <span style="color:green">'''saveDefaultRangeFile'''</span> [<span style="color:orange">--saveDefaultRangeFile</span>] [<span style="color:pink">-s</span>]: Save example range file containing 8 labels: air, lungs, soft tissue, fat, water, CSF, blood and muscle, cancellous bone, dense bone. More information about threshold can be found [http://en.wikipedia.org/wiki/Hounsfield_scale here] | ||
| + | ** <span style="color:green">'''defaultLabelValue'''</span> [<span style="color:orange">--defaultLabelValue</span>] [<span style="color:pink">-d</span>]: Sets the label value of voxels for which no value is specified in the range file | ||
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Latest revision as of 19:49, 20 August 2014
Home < Documentation < Nightly < Extensions < IntensitySegmenter
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
Author: Francois Budin
Contributors: Francois Budin (NIRAL, UNC), Pengdong Xiao (Department of Orthodontics, UNC), Beatriz Paniagua (Department of Orthodontics, UNC)
Contact: Francois Budin, <email>fbudin@unc.edu</email>
Website: https://www.nitrc.org/projects/dentaltools/
License: 3D Slicer License
UNC
NAMIC
Extension Description
Quick Tour of Features and Use
IntensitySegmenter is a simple tool that segments an image according to intensity value. It is mainly used to segment CT scans using the Hounsfield scale but the ranges of intensities and their corresponding labels can be specified in an input text file.
A list panels in the interface, their features, what they mean, and how to use them.
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Example of a range file:
-infty 45 0 45 700 8 700 +infty 9
The first and second values on each line are the minimum and maximum intensities for the corresponding label specified as the third value on each line.
Use Cases
Screenshot
Similar Extensions
N/A
Information for Developers
More information as well as the source code can found on the project webpage: https://www.nitrc.org/projects/dentaltools/
