Difference between revisions of "Documentation/4.3/Modules/Downsize"

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(Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> __NOTOC__ ===Downsize=== Downsize {| |thumb|280px|User Interface |[[Image:InputScanBadReso…')
 
 
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|[[Image:DownsizeInterface.png|thumb|280px|User Interface]]
 
|[[Image:DownsizeInterface.png|thumb|280px|User Interface]]
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|[[Image:InputScanBadResolution.png|thumb|280px|Input Scan Bad Voxel Based Resolution]]
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|[[Image:InputVolumeBadResolutionCMFreg.png|thumb|280px|Input Scan Bad Voxel Based Resolution]]
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|[[Image:OutputScanDownsized.png|thumb|280px|Output Scan Downsized]]
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|[[Image:OutputScanDownsizedCMFreg.png|thumb|280px|Output Scan Downsized]]
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== General Information ==
 
== General Information ==
  
 
===Module Type & Category===
 
===Module Type & Category===
  
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Type: CLI
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Type: Extension
  
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Category: CBCT Scan Registration pre steps
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Category: CBCT Scan Registration pre steps (voxel resolution)
  
  
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===Module Description===
 
===Module Description===
 
* <span style="color:blue">'''''Input Parameters'''''</span>:  
 
* <span style="color:blue">'''''Input Parameters'''''</span>:  
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** <span style="color:green">'''Baseline Scan (fixed)'''</span> [<span style="color:orange">-f --fixedVolume</span>] : The fixed scan image for registration.
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** <span style="color:green">'''Size'''</span> [<span style="color:orange">-s --spacing</span>] : The value of each voxel resolution for 3 dimensions
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** <span style="color:green">'''Follow up Scan (moving)'''</span> [<span style="color:orange">-m --movingVolume</span>] : The moving scan image for registration.
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** <span style="color:green">'''Input Volume'''</span> [<span style="color:orange">index: 0</span>] : Input volume to be resampled.
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** <span style="color:green">'''Baseline Segmentation (fixed)'''</span> [<span style="color:orange">--fixedBinaryVolume</span>] : The fixed one label segmentation image for registration used to specify the region of interest.
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** <span style="color:green">'''Output Volume'''</span> [<span style="color:orange">index: 1</span>] : Resampled Output Volume
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** <span style="color:green">'''Follow up Segmentation (moving)'''</span> [<span style="color:orange">--movingBinaryVolume</span>] : The moving one label segmentation image for registration used to specify the region of interest.
 
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* <span style="color:blue">'''''Voxel Based Registration Options'''''</span>:
 
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** <span style="color:green">'''Rigid + Scale (7DOF)'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
 
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** <span style="color:green">'''Rigid + Skew + Scale (10DOF)'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
 
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** <span style="color:green">'''Affine (12DOF)'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps.
 
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* <span style="color:blue">'''''Output Registration Matrix'''''</span>:
 
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** <span style="color:green">'''Registration Matrix'''</span> [<span style="color:orange">-t --transformPath</span>] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.
 
  
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* <span style="color:blue">'''''Apply Registration Matrix'''''</span>:
 
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** <span style="color:green">'''Input Segmentatiton to be Registered'''</span> [<span style="color:orange">--segmentation</span>] : Input segmentation image to be modified with the registration matrix.
 
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** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--segmentationOut</span>] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
 
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** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.
 
  
 
[[Image:DownsizeInterface.png|thumb|280px|User Interface]]
 
[[Image:DownsizeInterface.png|thumb|280px|User Interface]]

Latest revision as of 19:25, 18 September 2013

Home < Documentation < 4.3 < Modules < Downsize


For the latest Slicer documentation, visit the read-the-docs.



Downsize

Downsize

User Interface
Input Scan Bad Voxel Based Resolution
Output Scan Downsized

General Information

Module Type & Category

Type: Extension

Category: CBCT Scan Registration pre steps (voxel resolution)


Authors, Collaborators & Contact

Author: Vinicius Boen

Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)

Contact: vboen@umich.edu

Module Description

  • Input Parameters:
    • Size [-s --spacing] : The value of each voxel resolution for 3 dimensions
    • Input Volume [index: 0] : Input volume to be resampled.
    • Output Volume [index: 1] : Resampled Output Volume


User Interface
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