Difference between revisions of "Documentation/4.3/Modules/Growing"
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|[[Image:BaselineSegmentationMaskCMFreg.png|thumb|280px|Baseline Segmentation Mask - Input Seg]] | |[[Image:BaselineSegmentationMaskCMFreg.png|thumb|280px|Baseline Segmentation Mask - Input Seg]] | ||
|[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]] | |[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]] | ||
| − | |[[Image: | + | |[[Image:BaselineFollowupSCANRegisteredCMFreg.png|thumb|280px|Baseline Input Scan + Followup Input Scan]] |
| − | |[[Image: | + | |[[Image:BaselineFollowupSCANRegisteredCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]] |
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===Module Type & Category=== | ===Module Type & Category=== | ||
| − | Type: | + | Type: Extension |
Category: CBCT Scan Registration | Category: CBCT Scan Registration | ||
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* <span style="color:blue">'''''Voxel Based Registration Options'''''</span>: | * <span style="color:blue">'''''Voxel Based Registration Options'''''</span>: | ||
| − | ** <span style="color:green">''' | + | ** <span style="color:green">'''Rigid + Scale (7DOF)'''</span> [<span style="color:orange">--useScaleVersor3D</span>] : Perform a ScaleVersor3D registration as part of the sequential registration steps. |
| − | ** <span style="color:green">''' | + | ** <span style="color:green">'''Rigid + Skew + Scale (10DOF)'''</span> [<span style="color:orange">--useScaleSkewVersor3D</span>] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps. |
| − | ** <span style="color:green">''' | + | ** <span style="color:green">'''Affine (12DOF)'''</span> [<span style="color:orange">--useAffine</span>] : Perform an Affine registration as part of the sequential registration steps. |
* <span style="color:blue">'''''Output Registration Matrix'''''</span>: | * <span style="color:blue">'''''Output Registration Matrix'''''</span>: | ||
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** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied. | ** <span style="color:green">'''Output Registered Scan'''</span> [<span style="color:orange">--outputVolume</span>] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied. | ||
| − | + | [[Image:GrowingInterface.png|thumb|280px|User Interface]] | |
Latest revision as of 19:01, 20 September 2013
Home < Documentation < 4.3 < Modules < Growing
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Growing
Growing
General Information
Module Type & Category
Type: Extension
Category: CBCT Scan Registration
Authors, Collaborators & Contact
Author: Vinicius Boen
Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)
Contact: vboen@umich.edu
Module Description
- Input Parameters:
- Baseline Scan (fixed) [-f --fixedVolume] : The fixed scan image for registration.
- Follow up Scan (moving) [-m --movingVolume] : The moving scan image for registration.
- Baseline Segmentation (fixed) [--fixedBinaryVolume] : The fixed one label segmentation image for registration used to specify the region of interest.
- Follow up Segmentation (moving) [--movingBinaryVolume] : The moving one label segmentation image for registration used to specify the region of interest.
- Voxel Based Registration Options:
- Rigid + Scale (7DOF) [--useScaleVersor3D] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
- Rigid + Skew + Scale (10DOF) [--useScaleSkewVersor3D] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
- Affine (12DOF) [--useAffine] : Perform an Affine registration as part of the sequential registration steps.
- Output Registration Matrix:
- Registration Matrix [-t --transformPath] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.
- Apply Registration Matrix:
- Input Segmentatiton to be Registered [--segmentation] : Input segmentation image to be modified with the registration matrix.
- Output Registered Scan [--segmentationOut] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
- Output Registered Scan [--outputVolume] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.
