Difference between revisions of "Documentation/4.3/Modules/DataStore"

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*This work was supported by NIH Grant 3P41RR013218-12S1, NA-MIC, NAC, and the Slicer community.
 
*This work was supported by NIH Grant 3P41RR013218-12S1, NA-MIC, NAC, and the Slicer community.
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*This work is based on the [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/SlicerApplication/ExtensionsManager Extension Manager] created by Jean-Christophe Fillion-Robin (Kitware) and Zach Mullen (Kitware)
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*This work is based on the [http://www.slicer.org/wiki/Documentation/4.3/SlicerApplication/ExtensionsManager Extension Manager] created by Jean-Christophe Fillion-Robin (Kitware) and Zach Mullen (Kitware)
  
 
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{{documentation/{{documentation/version}}/extension-section|Extension Description}}
 
{{documentation/{{documentation/version}}/extension-section|Extension Description}}
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The Data Store extension allows an user to easily upload and download dataset files.
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The Data Store extension allows a user to easily upload and download MRB files.
  
 
Highlights:
 
Highlights:
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Image:UploadFile_1.jpg|The module allows an user to upload the current opened Sceneviews. To upload it, click on "Display Datastore"
 
Image:UploadFile_1.jpg|The module allows an user to upload the current opened Sceneviews. To upload it, click on "Display Datastore"
 
Image:UploadFile_2.jpg|Select the Upload tab and log in. You can create a new account by clicking on "Register Here"
 
Image:UploadFile_2.jpg|Select the Upload tab and log in. You can create a new account by clicking on "Register Here"
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Image:UploadFile_3.jpg|Define the Name and the Category of the Sceneviews and click on "Start the  Upload".  
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Image:UploadFile_3.jpg|Define the Name, the optional description and the Categories of the Sceneviews and click on "Start the  Upload".  
 
Image:UploadFile_4.jpg|The upload is complete.
 
Image:UploadFile_4.jpg|The upload is complete.
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</gallery>
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==Upload a new revision==
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In order to upload a dataset, you need a Slicer Midas account. (http://slicer.kitware.com/midas3).
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You can create a new one directly from the module.
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<gallery widths="250px" heights="250px" perrow="4">
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File:DeleteRemote_1.jpg|Go to the Sceneviews' page (see Download a dataset use case)".
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File:DeleteRemote_2.jpg|Authenticate using one of the "login" link
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File:DeleteRemote_3.jpg|If you are the owner of the Sceneviews, you will be able to click on "Upload a new revision".
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File:UploadRevision.jpg|Fill the form and click on "Upload a new revision". It will upload the current opened dataset.
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</gallery>
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==Edit a dataset's metadata==
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In order to upload a dataset, you need a Slicer Midas account. (http://slicer.kitware.com/midas3).
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You can create a new one directly from the module.
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<gallery widths="250px" heights="250px" perrow="4">
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File:DeleteRemote_1.jpg|Go to the Sceneviews' page (see Download a dataset use case)".
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File:DeleteRemote_2.jpg|Authenticate using one of the "login" link
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File:DeleteRemote_3.jpg|If you are the owner of the Sceneviews, you will be able to click on "Edit metadata".
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File:EditMetadata.jpg|The form allows you to manage the dataset's metadata. You can change its name, description or categories.
 
</gallery>
 
</gallery>
  

Latest revision as of 17:05, 21 November 2019

Home < Documentation < 4.3 < Modules < DataStore


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements

Author: Charles Marion (Kitware SAS), Jean-Baptiste Berger (Kitware SAS), Zach Mullen (Kitware Inc.) and Jean-Christophe Fillion-Robin (Kitware Inc.)
Contact: Charles Marion, <email>charles.marion@kitware.com</email>
Project website: http://slicer.kitware.com/midas3/slicerdatastore
License: Slicer license

The Slicer Data Store is hosted by Kitware using Midas Platform.

  • This work was supported by NIH Grant 3P41RR013218-12S1, NA-MIC, NAC, and the Slicer community.
  • This work is based on the Extension Manager created by Jean-Christophe Fillion-Robin (Kitware) and Zach Mullen (Kitware)

Extension Description

The Data Store extension allows a user to easily upload and download MRB files.

Highlights:

  • Browse and search datasets in a remote databae
  • Download, Review and comment the datasets
  • Upload new datasets

Use Cases

Download a dataset

  • The Data Store module appears under the Utilities category. The module has three tabs: Local Datasets, Download Datasets and Upload Datasets

  • The Download Dataset tab: This page allows a user to browse the .mrb files in the database. To see more information about the dataset, click on the dataset's thumbnail.

  • This page allows a user to review the Sceneviews that are inside the .mrb file. A viewer can rate, comment and download the dataset. Once downloaded, the dataset will automatically be opened in 3D Slicer's main view.

Delete or load a cached file

When you download a dataset from the remote database, the module will keep of a copy of the Sceneviews.

  • First of all, start the module

  • Select the "Local datasets" tab.

  • This page lists all the Sceneviews your previously downloaded. You can load them or delete the local copy.

Upload a dataset

In order to upload a dataset, you need a Slicer Midas account. (http://slicer.kitware.com/midas3). You can create a new one directly from the module.

  • The module allows an user to upload the current opened Sceneviews. To upload it, click on "Display Datastore"

  • Select the Upload tab and log in. You can create a new account by clicking on "Register Here"

  • Define the Name, the optional description and the Categories of the Sceneviews and click on "Start the Upload".

  • The upload is complete.

Upload a new revision

In order to upload a dataset, you need a Slicer Midas account. (http://slicer.kitware.com/midas3). You can create a new one directly from the module.

  • Go to the Sceneviews' page (see Download a dataset use case)".

  • Authenticate using one of the "login" link

  • If you are the owner of the Sceneviews, you will be able to click on "Upload a new revision".

  • Fill the form and click on "Upload a new revision". It will upload the current opened dataset.

Edit a dataset's metadata

In order to upload a dataset, you need a Slicer Midas account. (http://slicer.kitware.com/midas3). You can create a new one directly from the module.

  • Go to the Sceneviews' page (see Download a dataset use case)".

  • Authenticate using one of the "login" link

  • If you are the owner of the Sceneviews, you will be able to click on "Edit metadata".

  • The form allows you to manage the dataset's metadata. You can change its name, description or categories.

Delete an uploaded dataset on the remote database

  • Go to the Sceneviews' page (see Download a dataset use case)".

  • Authenticate using one of the "login" link

  • If you are the owner of the Sceneviews, you will be able to click on "Delete the dataset".

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