Difference between revisions of "Documentation/4.3/Extensions/XNATSlicer"

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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 
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[[File:XNATSlicer-Med.png]]<br>
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[[File:XNATSlicer-MainIcon.png|center|700px]]<br>
 
Extension: [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br>
 
Extension: [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br>
 
Acknowledgments: TBD<br>
 
Acknowledgments: TBD<br>
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Author: Sunil Kumar (Washington University in St. Louis)<br>
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Author: Sunil Kumar (Moka Creative, LLC / Washington University in St. Louis)<br>
 
Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper ({{collaborator|name|spl}}) <br>
 
Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper ({{collaborator|name|spl}}) <br>
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Contact: Sunil Kumar, <email>kumars@mir.wustl.edu</email><br>
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Contact: Rick Herrick, <email>herrickr@mir.wustl.edu</email><br>
 
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{{documentation/{{documentation/version}}/module-section|Module Description}}
 
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Secure GUI-based IO with any XNAT server.  Powered by PyXNAT.  Win64 for now.<br>
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Secure GUI-based IO with any XNAT server.  For Slicer 4.3+<br>
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 +
 
  
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== Repositories ==
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Features:<br>
 
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*;Download and view
 
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**Scans (individual or batch)
 
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**Bundled Slicer scenes (*.mrb)
 
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**Any Slicer-readable file
 
  
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*;Upload
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<b>Please note the new repository: https://github.com/NrgXnat/XNATSlicer.git</b>
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**Bundled Slicer scenes (*.mrb)
 
  
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*;Other
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Another old repository is https://github.com/MokaCreativeLLC/XNATSlicer ...
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**Project and folder creation
 
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**File deletion 
 
  
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For XNATSlicer for Slicer 4.2, the old repository is https://github.com/skumar221/XNATSlicer
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{{documentation/{{documentation/version}}/module-section|Install Instructions}}
 
  
  
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<br><br><b>The only step needed is to make sure you have Read+Write permissions for your Slicer install directory. (If you already do, you can proceed to the [[#First Login|First Login]] section.)</b><br><br><br>
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Features
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----
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* Visualize XNAT hosted images in Slicer.
 +
* Create, modify and save Slicer scenes directly from/to XNAT.
 +
* Toggle and customize XNAT metadata.
 +
* Create new projects, subjects and experiments on the fly.
 +
* Search projects, subjects and experiments.
 +
* Fluid interaction between Slicer and XNAT.
 +
* Secure login and host management.
  
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<gallery widths=230px heights=230px perrow=4>
 
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File:XNATSlicer-Perms1.jpg|1. Navigate to the directory where Slicer is installed (or the master-build directory if you are using the compiled version)
 
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File:XNATSlicer-Perms2.jpg|2. Right click on the Slicer install folder and go to "Properties."
 
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File:XNATSlicer-Perms3-4.jpg|3. Go to the "Security" Tab. Click on "Users" (or the equivalent group) under the "Groups or user names:" category.  Then click the "edit button".  A "Permissions" window will pop up.  In the "Permissions" window, select "Users" again and make sure "Allow" is checked for all options. Hit "OK."
 
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File:XNATSlicer-Perms5.jpg|4. You should now see that Users have Read+Write access for the Slicer install folder.
 
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</gallery>
 
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You're all set.  Just load up the XNATSlicer module and click the "Login" button, and the module will install the additional libraries for you.  If you need a walkthrough, look [[#First Login|below]].<br>
 
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{|
 
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<gallery widths=230px heights=230px perrow=4>
 
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File:XNATSlicer-LibInstall1.jpg|1. During your first login, the XNATSlicer module will install it's external libraries for you.  Just click the "Login" button.
 
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File:XNATSlicer-LibInstall2.jpg|2. You'll be notified that the module will install external libraries.  Hit "OK."
 
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File:XNATSlicer-LibInstall3.jpg|3. You'll be warned that you need full [[#Install Instructions|Read+Write]] access to your Slicer install directory.  Assuming you followed the [[#Install Instructions|instructions above]], hit "OK."
 
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File:XNATSlicer-LibInstall4.jpg|4. A popup will appear telling you what libraries are being installed.
 
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File:XNATSlicer-LibInstall5.jpg|5. You'll be asked to restart Slicer.  Afterwards, just log in to your XNAT host of choice and you're all set.  See the [[#Panels and their use|"Panels and their use"]] section.
 
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{{documentation/{{documentation/version}}/module-section|Use Cases}}
 
{{documentation/{{documentation/version}}/module-section|Use Cases}}
 
{|
 
{|
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Coming Soon!
 
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{{documentation/{{documentation/version}}/module-section|Panels and their use}}
 
{{documentation/{{documentation/version}}/module-section|Panels and their use}}
  
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<b>For Users</b>
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{|
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[[File:UserDesc_MainPanel.png|800px]]
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|}
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<b>For Developers</b>
 
{|
 
{|
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|[[Image:XNATSlicer-Panel.png|thumb|340px|XNATSlicer]]
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[[File:DeveloperDesc_MainPanel.png|800px]]
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|
 
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* Secure login
 
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* Status updater
 
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* Project and file browser
 
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** Traverse via tree
 
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** Download/view
 
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** Upload
 
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** Create projects and folders
 
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** Delete folders and files
 
 
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{{documentation/{{documentation/version}}/module-section|Information for Developers}}
 
{{documentation/{{documentation/version}}/module-section|Information for Developers}}
 
{{documentation/{{documentation/version}}/module-developerinfo}}
 
{{documentation/{{documentation/version}}/module-developerinfo}}
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Source code: https://github.com/sunilk-wustl/XNATSlicer
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Source code: https://github.com/skumar221/XNATSlicer
  
 
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Latest revision as of 18:07, 20 November 2014

Home < Documentation < 4.3 < Extensions < XNATSlicer


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements

XNATSlicer-MainIcon.png

Extension: XNATSlicer
Acknowledgments: TBD
Author: Sunil Kumar (Moka Creative, LLC / Washington University in St. Louis)
Contributors: Dan Marcus (Washington University in St. Louis), Steve Pieper (SPL)
Contact: Rick Herrick, <email>herrickr@mir.wustl.edu</email>

National Alliance for Medical Image Computing (NA-MIC)  
The Neuroinformatics Research Group - WUSTL  

Module Description

Secure GUI-based IO with any XNAT server. For Slicer 4.3+


Repositories

Please note the new repository: https://github.com/NrgXnat/XNATSlicer.git

Another old repository is https://github.com/MokaCreativeLLC/XNATSlicer ...

For XNATSlicer for Slicer 4.2, the old repository is https://github.com/skumar221/XNATSlicer


Features

  • Visualize XNAT hosted images in Slicer.
  • Create, modify and save Slicer scenes directly from/to XNAT.
  • Toggle and customize XNAT metadata.
  • Create new projects, subjects and experiments on the fly.
  • Search projects, subjects and experiments.
  • Fluid interaction between Slicer and XNAT.
  • Secure login and host management.


Use Cases

Coming Soon!

Tutorials

Panels and their use

For Users

UserDesc MainPanel.png


For Developers

DeveloperDesc MainPanel.png

Similar Modules

References

Information for Developers

Work in progress
 Section under construction.


Source code: https://github.com/skumar221/XNATSlicer

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