Difference between revisions of "Modules:AffineRegistration-Documentation"

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The Affine Registration module is a CLI module using the ITK...
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[[Documentation|Return to Slicer Documentation]]
  
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If you want a resampled data set from the moving data set, then use the pull-down menues to generate a new output volume and a new transform
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The Affine Registration module is a CLI module using the up-to-data ITK capabilities. The CLI component was implemented by Jim Miller.
  
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If you do not want to resample the data, then:
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*If the intended outcome is a transformation matrix being applied to the moving volume, please use the following procedure:
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# Tell the Linear or Affine plugin to generate an output transform
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# In the IO section select "create new transform" by clicking on the output transform pull-down menue
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# Do not tell the Linear or Affine plugin to generate an output volume
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# Select the fixed and moving image and click Apply
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# After running the module, go to the Data module and put the moving image under the transform AND go the Transform module and invert the transform (or you can put the fixed image under the calculated transform and not invert it).
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# After you get the Status completed message,  
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## Go to the Data module and drag the moving volume onto the line that says Affine registatration transform
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## Go to the transform module, select the transform you just created (even if it already shows up as a selection), at the bottom of the module click on the invert transform button
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*If the intended outcome is a resampled volume, then select Create New Volume under Output Volume, you do not have to select an output transform

Latest revision as of 12:20, 30 May 2008

Home < Modules:AffineRegistration-Documentation
Return to Slicer Documentation

The Affine Registration module is a CLI module using the up-to-data ITK capabilities. The CLI component was implemented by Jim Miller.

  • If the intended outcome is a transformation matrix being applied to the moving volume, please use the following procedure:
  1. In the IO section select "create new transform" by clicking on the output transform pull-down menue
  2. Select the fixed and moving image and click Apply
  3. After you get the Status completed message,
    1. Go to the Data module and drag the moving volume onto the line that says Affine registatration transform
    2. Go to the transform module, select the transform you just created (even if it already shows up as a selection), at the bottom of the module click on the invert transform button
  • If the intended outcome is a resampled volume, then select Create New Volume under Output Volume, you do not have to select an output transform
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