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| | + | <noinclude>{{documentation/versioncheck}}</noinclude> |
| | __NOTOC__ | | __NOTOC__ |
| | {{documentation/versionlist}} | | {{documentation/versionlist}} |
| | | | |
| − | =Table of Content=
| |
| | {| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2" | | {| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2" |
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| | |valign="top"| | | |valign="top"| |
| | + | ---- |
| | + | <span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span> |
| | + | ---- |
| | + | * [[Documentation/{{documentation/version}}/Training|Training pages]] |
| | + | : Information on how to use Slicer {{documentation/version}} |
| | | | |
| − | ===Slicer Application===
| + | * [[Documentation/{{documentation/version}}/FAQ|FAQ]] |
| | + | : Set of common questions/answers |
| | + | * [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives] |
| | ---- | | ---- |
| − | *[[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI| Main Application GUI]]
| + | <span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> |
| − | | + | ---- |
| − | *[[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts | Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]]
| + | * [[Documentation/{{documentation/version}}/Report a problem|Report a problem]] |
| − | | |
| − | *[[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration | '''Computer Configurations''']]
| |
| − | *[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]]. (Julien Finet)
| |
| − | <!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. -->
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| − | *[[Documentation/{{documentation/version}}/SlicerApplication/LookupTables | Slicer Lookup Tables]] | |
| − | *[[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]
| |
| − | | |
| − | ===Mailing Lists===
| |
| | ---- | | ---- |
| − | * [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Mailing list for users]
| + | {{:{{FULLPAGENAME}}/SlicerApplication}} |
| − | :[http://slicer-users.65878.n3.nabble.com/ Search] in archives on nabble.com
| |
| − | * [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Mailing list for developers]
| |
| − | :[http://slicer-devel.65872.n3.nabble.com/ Search] in archives on nabble.com
| |
| − | | |
| − | <!--
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| − | *[[Modules:ExtensionsManagementWizard-Documentation-4.0| Extensions Management Wizard]] (xx)
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| − | -->
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| | | | |
| | |bgcolor="#CCCCCC"| | | |bgcolor="#CCCCCC"| |
| | |valign="top"| | | |valign="top"| |
| − | | + | ---- |
| − | ===Module Categories === | + | <span style="color: #555555; font-size: 18px; font-weight: bold;">Module Categories</span> |
| | ---- | | ---- |
| | * [[#Core Modules|Core Modules]] | | * [[#Core Modules|Core Modules]] |
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| | * [[#Converters|Converters]] | | * [[#Converters|Converters]] |
| | * [[#Endoscopy|Endoscopy]] | | * [[#Endoscopy|Endoscopy]] |
| | + | * [[#Work in Progress| Work in Progress]] |
| | * [[#Developer Tools|Developer Tools]] | | * [[#Developer Tools|Developer Tools]] |
| | * [[#Legacy|Legacy]] | | * [[#Legacy|Legacy]] |
| | + | |
| | |bgcolor="#CCCCCC"| | | |bgcolor="#CCCCCC"| |
| | |valign="top"| | | |valign="top"| |
| | + | ---- |
| | + | <span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span> |
| | + | ---- |
| | + | * [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]] |
| | + | : Source code, contribute patch, develop modules |
| | | | |
| − | ===Miscellaneous=== | + | * [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives] |
| | + | : Intended for discussion of programming related questions |
| | + | ---- |
| | + | <span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span> |
| | ---- | | ---- |
| | <!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] --> | | <!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] --> |
| | + | |
| | + | * [[Documentation/4.1/HowTo|Documentation guidelines]] |
| | + | : Slicer user documentation principle and guidelines |
| | | | |
| | * [[Slicer4:VisualBlog|Visual blog]] | | * [[Slicer4:VisualBlog|Visual blog]] |
| | : Set of screenshots showing Slicer in action. | | : Set of screenshots showing Slicer in action. |
| − |
| |
| − | <!--
| |
| − | * [[Documents and links]]
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| − | : Set of presentations made on Slicer and document talking about it.
| |
| − |
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| − | -->
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| − | * [[Documentation/4.0/Training|Training pages]]
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| − | : Information on how to use Slicer {{documentation/version}}
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| − |
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| − | * [[Documentation/{{documentation/version}}/FAQ|FAQ]]
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| − | : Set of common questions/answers
| |
| | | | |
| | * [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]] | | * [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]] |
| | : Platform specific issues and considerations | | : Platform specific issues and considerations |
| | | | |
| − | * [[Documentation/{{documentation/version}}/Announcements|Announcements]] | + | * [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments] |
| − | : the announcement associated with Slicer {{documentation/version}} | |
| | | | |
| − | ===Developers Corner===
| + | * [http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library] |
| − | ----
| + | : Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. |
| − | * [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]] | |
| − | : Where to find the source code, how to compile ... | |
| − | |}
| |
| − | | |
| − | =General Information=
| |
| − | {|width="100%"
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| − | |rowspan="3"|
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| − | {{Infobox
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| − | |name = 3D Slicer {{documentation/version}}
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| − | |above = 3D Slicer
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| − | |abovestyle =
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| − | | |
| − | |image = [[File:3DSlicer41Logo-H-218X144.png|218px|alt=3D Slicer {{documentation/version}}]]
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| − | |imagestyle =
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| − | |headerstyle = background:#E7DCC3;
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| − | |labelstyle =
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| − | |datastyle =
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| | | | |
| − | |header1 = Description
| |
| − | |label1 =
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| − | |data1 =
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| − | |header2 =
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| − | |label2 =
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| − | |data2 = Research platform for the analysis and visualization of medical images, including image guided therapy.
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| − | |header3 =
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| − | |label3 =
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| − | |data3 = Free and extensible open source package.
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| − | |header4 =
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| − | |label4 = Multi-platform
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| − | |data4 = Linux, MacOSX, Windows
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| − | |header5 =
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| − | |label5 = Version
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| − | |data5 = {{documentation/version}}
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| − | |header6 =
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| − | |label6 = License
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| − | |data6 = [http://www.slicer.org/pages/LicenseText Contribution and Software License Agreement]
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| − | }}
| |
| − | |align="center"|
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| − | [[{{collaborator|logo|slicer4}}|x350px]]
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| − | |-
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| − | |
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| − | {{ombox
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| − | |type=content
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| − | |text=The {{documentation/version}} release of 3D Slicer contains significant changes both to the organization of the software and to the functionality. Please check the [[Documentation/{{documentation/version}}/Announcements | Announcement]] page for more details. The community contributing to Slicer {{documentation/version}} is acknowledged [http://www.slicer.org/pages/Acknowledgments here].
| |
| − | }}
| |
| − | <!--|-
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| − | |
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| − | {{ombox | text = For information on how to obtain Slicer {{documentation/version}} please go to the [[Snapshots|Download Pages]]. }}-->
| |
| | |} | | |} |
| | | | |
| − | =Modules by Category=
| + | {{:{{FULLPAGENAME}}/Modules}} |
| − | ==Core Modules==
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]] (Nicole Aucoin)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Colors|Colors]] (Nicole Aucoin)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Data|Data]] (Julien Finet)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]] (Steve Pieper)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Models|Models]] (Nicole Aucoin)
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| − | *[[Documentation/{{documentation/version}}/Modules/SceneViews|SceneViews]] (Nicole Aucoin)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] (Alex Yarmarkovich)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/ViewControllers|View Controllers]] (Jim Miller)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]] (Steve Pieper)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]] (Julien Finet)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/SlicerWelcome|Welcome to Slicer]] (Wendy Plesniak)
| |
| − | | |
| − | ==Wizards==
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| − | *[[Documentation/{{documentation/version}}/Modules/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
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| − | | |
| − | ==Informatics==
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| − | *[[Documentation/{{documentation/version}}/Modules/SampleData|Sample Data]] (Steve Pieper)
| |
| − | | |
| − | ==Registration==
| |
| − | *[[:Category:Documentation/{{documentation/version}}/Modules/Registration|Introduction to Registration]] (Dominik Meier)
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| − | *[[Documentation/{{documentation/version}}/Modules/BRAINSFit|General Brainsfit Registration]] (Hans Johnson)
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| − | *[[Documentation/{{documentation/version}}/Modules/BRAINSResample|Resample Image (BRAINS)]] (Hans Johnson)
| |
| − | *Specialized
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| − | **[[Documentation/{{documentation/version}}/Modules/ACPCTransform|ACPC Transform]] (Nicole Aucoin)
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| − | **[[Documentation/{{documentation/version}}/Modules/BRAINSDemonWarp|Demon Registration (BRAINS)]] (Hans Johnson)
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| − | **[[Documentation/{{documentation/version}}/Modules/FiducialRegistration|Fiducial Registration]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]]
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| − | **Vector Demon Registration (Hans Johnson)
| |
| − | **[[Documentation/{{documentation/version}}/Modules/Reformat|Reformat]] (Michael Jeulin-Lagarrigue)
| |
| − | | |
| − | ==Segmentation==
| |
| − | *[[Documentation/{{documentation/version}}/Modules/EMSegment Easy|EMSegment Easy (no atlas)]] (Kilian Pohl)
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| − | *[[Documentation/{{documentation/version}}/Modules/EMSegmenter|EMSegment (with atlas)]] (Kilian Pohl)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] (Jim Miller, Harini Veeraraghavan)
| |
| − | *Specialized
| |
| − | **[[Documentation/{{documentation/version}}/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl)
| |
| − | **[[Documentation/{{documentation/version}}/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson)
| |
| − | **[[Documentation/{{documentation/version}}/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] (Yi Gao)
| |
| − | | |
| − | ==Quantification==
| |
| − | *[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper)
| |
| − | *[[Documentation/{{documentation/version}}/Modules/LabelStatistics|Label Statistics]] (Steve Pieper)
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| − | *[[Documentation/{{documentation/version}}/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] (Nicole Aucoin)
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| − | * Change quantification
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| − | ** [[Documentation/{{documentation/version}}/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] (Andrey Fedorov)
| |
| − | | |
| − | ==Diffusion==
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| − | *DWI to Full Brain Tractography (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | *Denoising
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| − | **[[Documentation/{{documentation/version}}/Modules/DWIJointRicianLMMSEFilter|DWI Joint Rician LMMSE Image Filter]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/DWIRicianLMMSEFilter|DWI Rician LMMSE Filter]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
| |
| − | *Tractography
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| − | **[[Documentation/{{documentation/version}}/Modules/TractographyDisplay|Tractography Display]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/TractographyFiducialSeeding|Tractography Fiducial Seeding]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
| |
| − | *Utilities
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| − | **[[Documentation/{{documentation/version}}/Modules/DWIToDTIEstimation|DWI To DTI Estimation]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/ResampleDTIVolume|Resample DTI Volume]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]
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| − | *Data Conversion
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| − | **[[Documentation/{{documentation/version}}/Modules/DTIImport|DTIImport]][[image:UnderConstruction.png|tumb|10px]] (Sonia Pujol)
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| − | **[[Documentation/{{documentation/version}}/Modules/DTIExport|DTIExport]][[image:UnderConstruction.png|tumb|10px]] (Sonia Pujol)
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| − | | |
| − | ==IGT==
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| − | *[[Documentation/{{documentation/version}}/Modules/OpenIGTLinkIF| OpenIGTLink IF]] (Junichi Tokuda) [[image:UnderConstruction.png|tumb|10px]]
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| − | | |
| − | ==Filtering==
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| − | *[[Documentation/{{documentation/version}}/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov)
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| − | *[[Documentation/{{documentation/version}}/Modules/CheckerBoardFilter|CheckerBoard Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/ExtractSkeleton|Extract Skeleton]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/HistogramMatching|Histogram Matching]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/ImageLabelCombine|Image Label Combine]] (Alex Yarmarkovich)
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| − | *[[Documentation/{{documentation/version}}/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]] (Francois Budin) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] (Nicole Aucoin)
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| − | *[[Documentation/{{documentation/version}}/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *Arithmetic
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| − | **[[Documentation/{{documentation/version}}/Modules/AddScalarVolumes|Add Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/CastScalarVolume| Cast Scalar Volume]] (Nicole Aucoin)
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| − | **[[Documentation/{{documentation/version}}/Modules/MaskScalarVolume| Mask Scalar Volume]] (Nicole Aucoin)
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| − | **[[Documentation/{{documentation/version}}/Modules/MultiplyScalarVolumes| Multiply Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/SubtractScalarVolumes| Subtract Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *Denoising
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| − | **[[Documentation/{{documentation/version}}/Modules/GradientAnisotropicDiffusion |Gradient Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/MedianImageFilter|Median Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *Morphology
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| − | **[[Documentation/{{documentation/version}}/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] (Jim Miller)
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| − | **[[Documentation/{{documentation/version}}/Modules/GrayscaleGrindPeakImageFilter|GGrayscale Grind Peak Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | | |
| − | ==Surface Models==
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| − | *[[Documentation/{{documentation/version}}/Modules/GrayscaleModelMaker| Grayscale Model Maker]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/LabelMapSmoothing|Label Map Smoothing]] [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/MergeModels| Merge Models]] (Nicole Aucoin)
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| − | *[[Documentation/{{documentation/version}}/Modules/ModelMaker| Model Maker]] (Nicole Aucoin)
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| − | *[[Documentation/{{documentation/version}}/Modules/ModelToLabelMap| Model To LabelMap]] (Nicole Aucoin)
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| − | *[[Documentation/{{documentation/version}}/Modules/ProbeVolumeWithModel| Probe Volume With Model]] (Lauren O'Donnell) [[image:UnderConstruction.png|tumb|10px]]
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| − | | |
| − | ==Converters==
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| − | *[[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|Create DICOM Series]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/Crop Volume|Crop Volume]] (Andrey Fedorov)
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| − | *[[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|Dicom to Nrrd Converter]] (Jim Miller)
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| − | *[[Documentation/{{documentation/version}}/Modules/OrientScalarVolume| Orient Scalar Volume]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | | |
| − | ==Endoscopy==
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| − | *[[Documentation/{{documentation/version}}/Modules/Endoscopy|Endoscopy]] (Steve Pieper)
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| − | | |
| − | ==Developer Tools==
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| − | *[[Documentation/{{documentation/version}}/Modules/Cameras|Cameras]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/EventBroker|Event Broker]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/ExecutionModelTour |Execution Model Tour]] (JC Fillion-Robin) [[image:UnderConstruction.png|tumb|10px]]
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| − | *[[Documentation/{{documentation/version}}/Modules/YOURMODULENAME|Module Template]] (JC Fillion-Robin)
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| − | *Performance Tests
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| − | *Tractography
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| − | | |
| − | ==Legacy==
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| − | *Converters
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| − | **[[Documentation/{{documentation/version}}/Modules/BSplineToDeformationField|BSpline To Deformation Field]]
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| − | *Diffusion
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| − | **Denoising
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| − | ***[[Documentation/{{documentation/version}}/Modules/DWIUnbiasedNonLocalMeansFilter|DWI Unbiased Non Local Means Filter]]
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| − | *Filtering
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| − | **[[Documentation/{{documentation/version}}/Modules/MRIBiasFieldCorrection|MRI Bias Field Correction]] (Sylvain Jaume) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/ResampleScalarVolume|Resample Scalar Volume]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | *Registration
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| − | **[[Documentation/{{documentation/version}}/Modules/RigidRegistration|Rigid Registration]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/AffineRegistration|Affine Registration]] (Daniel Blezek) [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/BSplineDeformableRegistration|BSpline Deformable Registration]] [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/LinearRegistration|Linear Registration]] [[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/MultiResolutionAffineRegistration|MultiResolution Affine Registration]] [[image:UnderConstruction.png|tumb|10px]]
| |
| − | <!--
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| − | **[[Documentation/{{documentation/version}}/Modules/TestGridTransformRegistration|Test Grid Transform Registration]] [[image:UnderConstruction.png|tumb|10px]]
| |
| − | -->
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| − | *Segmentation
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| − | **[[Documentation/{{documentation/version}}/Modules/OtsuThresholdSegmentation|Otsu Threshold Segmentation]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]]
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| − | | |
| − | =Extensions=
| |
| − | ==Introduction==
| |
| − | [[Documentation/4.1/Extensions|Extensions]] which can be added to the basic Slicer package in order to add functionality. The slicer community maintains a website to support finding, downloading and installing Extensions for 3D Slicer 4. Access to this website is integral to Slicer 4 and facilitated by the Extensions Manager functionality built into the distributed program. Please see [[Documentation/{{documentation/version}}/Developers/Tutorials/ExtensionWriting|here]] for information for software developers on how to add your extension to this website.
| |
| − | | |
| − | The download site is referred to as the '''Slicer Extensions Catalog'''. The Catalog classifies extensions into three levels of compliance:
| |
| − | *Category 1: Fully compliant Slicer Extensions: Slicer license, open source, maintained.
| |
| − | *Category 2: open source, contact exists.
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| − | *Category 3: all other extensions (work in progress, beta, closed source etc).
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| − | | |
| − | See [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionCatalogPolicies|here]] for more information about extension types and policies.
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| − | | |
| − | ==Cat 1==
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| − | | |
| − | ==Cat 2==
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| − | * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)[[image:UnderConstruction.png|tumb|10px]]
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| − | | |
| − | ==Cat 3==
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| − | * [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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| − | **[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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