Difference between revisions of "Documentation/4.1/Extensions/Plastimatch"
From Slicer Wiki
m (Text replacement - "<email>(.*)@(.*)<\/email>" to "$1{{@}}$2") |
|||
| (4 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| + | <noinclude>{{documentation/versioncheck}}</noinclude> | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/module-header}} | {{documentation/{{documentation/version}}/module-header}} | ||
| Line 6: | Line 7: | ||
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}} | {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}} | ||
Author: Greg Sharp<br> | Author: Greg Sharp<br> | ||
| − | Contributors: Jean-Christophe | + | Contributors: Jean-Christophe Fillion-Robin (Kitware)<br> |
| − | Contact: Greg Sharp, | + | Contact: Greg Sharp, gcsharp{{@}}partners.org<br> |
Website: http://plastimatch.org/<br> | Website: http://plastimatch.org/<br> | ||
License: [http://forge.abcd.harvard.edu/gf/project/plastimatch/scmsvn/?action=browse&path=%2F*checkout*%2Fplastimatch%2Ftrunk%2Fsrc%2Fplastimatch%2FLICENSE.TXT&revision=2388 BSD] | License: [http://forge.abcd.harvard.edu/gf/project/plastimatch/scmsvn/?action=browse&path=%2F*checkout*%2Fplastimatch%2Ftrunk%2Fsrc%2Fplastimatch%2FLICENSE.TXT&revision=2388 BSD] | ||
| Line 14: | Line 15: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|Extension Description}} |
Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include: | Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include: | ||
| Line 28: | Line 29: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|Modules}} |
*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] | *[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] | ||
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] | *[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] | ||
| Line 40: | Line 41: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|Use Cases}} |
[http://plastimatch.org/data_sources.html Sample data] to use with modules. | [http://plastimatch.org/data_sources.html Sample data] to use with modules. | ||
<gallery widths="200px" perrow="4"> | <gallery widths="200px" perrow="4"> | ||
| Line 52: | Line 53: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|Tutorials}} |
<gallery widths="200px" perrow="4"> | <gallery widths="200px" perrow="4"> | ||
| Line 64: | Line 65: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|Similar Extensions}} |
N/A | N/A | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|References}} |
* G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007. | * G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007. | ||
* V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008. | * V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008. | ||
| Line 76: | Line 77: | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-section|Information for Developers}} |
| − | {{documentation/{{documentation/version}}/ | + | {{documentation/{{documentation/version}}/extension-developerinfo}} |
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
| − | + | {{documentation/{{documentation/version}}/extension-footer}} | |
| − | |||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
Latest revision as of 05:19, 27 November 2019
Home < Documentation < 4.1 < Extensions < Plastimatch
|
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
Author: Greg Sharp
Contributors: Jean-Christophe Fillion-Robin (Kitware)
Contact: Greg Sharp, gcsharp
partners.org
Website: http://plastimatch.org/
License: BSD
Extension Description
Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). Software features include:
- B-spline method for deformable image registration (GPU and multicore accelerated)
- Demons method for deformable image registration (GPU accelerated)
- ITK-based algorithms for translation, rigid, affine, demons, and B-spline registration
- Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types
- Landmark-based deformable registration using thin-plate splines for global registration
- Landmark-based deformable registration using radial basis functions for local corrections
- Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze
- DICOM and DICOM-RT import and export
- XiO import and export
Modules
- Plastimatch Automatic deformable image registration
- Plastimatch DICOM-RT import
- Plastimatch DICOM-RT export
- Plastimatch Dose Comparison
- Plastimatch Dose Volume Histogram
- Plastimatch LANDWARP Landmark
- Plastimatch Synthetic Image Generation
- Plastimatch Threshold in a box
- Plastimatch XFORMWARP
Use Cases
Sample data to use with modules.
DICOM-RT Structure Set
DICOM-RT Dose
Before Registration
After Registration
Before Registration
After Registration
Tutorials
Similar Extensions
N/A
References
- G Sharp, N Kandasamy, H Singh, M Folkert, "GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration," Physics in Medicine and Biology, 52(19), pp 5771-83, 2007.
- V Boldea, G Sharp, SB Jiang, D Sarrut, "4D-CT lung motion estimation with deformable registration: Quantification of motion nonlinearity and hysteresis," Medical Physics, 33(3), pp 1008-18, 2008.
- Z Wu, E Rietzel, V Boldea, D Sarrut, G Sharp, "Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations," Medical Physics, 35(2), pp 775-81, 2008.
- G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.
- N. Shusharina, G. Sharp "Landmark-based image registration with analytic regularization", IEEE Trans. Med. Imag., submitted, 2011.
Information for Developers
 |
Section under construction. |
