Difference between revisions of "Modules:BRAINSROIAuto-Documentation-3.6"
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===Quick Tour of Features and Use=== | ===Quick Tour of Features and Use=== | ||
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*Configuration Parameters | *Configuration Parameters | ||
**Otsu Percentile Threshold: At what percentile should the Otsu Thresholding algorithm begin masking. | **Otsu Percentile Threshold: At what percentile should the Otsu Thresholding algorithm begin masking. | ||
− | **Otsu | + | **Otsu Correction Factor: Used to scale the Otsu algorithm's results in cases where the mask generated is incorrect. |
**Closing Size: The size for the largest void to fill in the mask, in voxels. | **Closing Size: The size for the largest void to fill in the mask, in voxels. | ||
**Output Image Pixel Type: the scalar type of the masked output volume. | **Output Image Pixel Type: the scalar type of the masked output volume. | ||
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Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing. | Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing. | ||
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Links to the module's source code: | Links to the module's source code: | ||
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===References=== | ===References=== | ||
Publications related to this module go here. Links to pdfs would be useful. | Publications related to this module go here. Links to pdfs would be useful. | ||
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Latest revision as of 15:37, 7 May 2010
Home < Modules:BRAINSROIAuto-Documentation-3.6Return to Slicer 3.6 Documentation
Module Name
BRAINSROIAuto
General Information
Module Type & Category
Type: CLI
Category: Registration
Authors, Collaborators & Contact
- Author1: Hans Johnson, University of Iowa
- Contributor1: Kent WIlliams, University of Iowa
- Contact: Hans Johnson, hans-johson at uiowa.edu
Module Description
BRAINSROIAuto is a program whose purpose is to automatically generate a Binary Image (or Mask) to encompass the region in an brain image volume occupied by the brain.
Usage
In general, BRAINSROIAuto takes a brain image volume, and generates a mask without requiring parameter tweaking.
Quick Tour of Features and Use
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Development
Notes from the Developer(s)
Dependencies
BRAINSFit depends on Slicer3 (for the SlicerExecutionModel support) and ITK.
Tests
TODO: Link to BRAINS3 and/or Slicer3 dashboard tests.
Known bugs
Links to known bugs in the Slicer3 bug tracker
Usability issues
Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.