Difference between revisions of "Slicer3:Mori-Atlas labels"
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*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | *Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | ||
− | * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. | + | * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255. |
− | + | * [[Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I]] | |
+ | * [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II]] | ||
+ | * [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III]] | ||
*List | *List | ||
Line 22: | Line 24: | ||
|- | |- | ||
| 2 | | 2 | ||
− | | PCT_Pontine_crossing_tract_(a_part_of_MCP) | + | | PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype |
| style="background:navajowhite"| navajowhite | | style="background:navajowhite"| navajowhite | ||
|- | |- | ||
| 3 | | 3 | ||
| GCC_Genu_of_corpus_callosum | | GCC_Genu_of_corpus_callosum | ||
− | | style="background: | + | | style="background:plum"| plum |
|- | |- | ||
| 4 | | 4 | ||
Line 51: | Line 53: | ||
| 9 | | 9 | ||
| ML-R_Medial_lemniscus_right | | ML-R_Medial_lemniscus_right | ||
− | | style="background: | + | | style="background:mediumspringgreen"| mediumspringgreen |
|- | |- | ||
| 10 | | 10 | ||
| ML-L_Medial_lemniscus_left | | ML-L_Medial_lemniscus_left | ||
− | | style="background: | + | | style="background:mediumspringgreen"| mediumspringgreen |
|- | |- | ||
| 11 | | 11 | ||
Line 131: | Line 133: | ||
| 29 | | 29 | ||
| PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right | | PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right | ||
− | | style="background: | + | | style="background:sandybrown"| sandybrown |
|- | |- | ||
| 30 | | 30 | ||
| PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left | | PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left | ||
− | | style="background: | + | | style="background:sandybrown"| sandybrown |
|- | |- | ||
| 31 | | 31 | ||
| SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right | | SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right | ||
− | | style="background: | + | | style="background:peachpuff"| peachpuff |
|- | |- | ||
| 32 | | 32 | ||
| SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left | | SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left | ||
− | | style="background: | + | | style="background:peachpuff"| peachpuff |
|- | |- | ||
| 33 | | 33 | ||
| EC-R_External_capsule_right | | EC-R_External_capsule_right | ||
− | | style="background: | + | | style="background:darksalmon"| darksalmon |
|- | |- | ||
| 34 | | 34 | ||
| EC-L_External_capsule_left | | EC-L_External_capsule_left | ||
− | | style="background: | + | | style="background:darksalmon"| darksalmon |
|- | |- | ||
| 35 | | 35 | ||
| CGC-R_Cingulum_(cingulate_gyrus)_right | | CGC-R_Cingulum_(cingulate_gyrus)_right | ||
− | | style="background: | + | | style="background:mediumseagreen"| mediumseagreen |
|- | |- | ||
| 36 | | 36 | ||
| CGC-L_Cingulum_(cingulate_gyrus)_left | | CGC-L_Cingulum_(cingulate_gyrus)_left | ||
− | | style="background: | + | | style="background:mediumseagreen"| mediumseagreen |
|- | |- | ||
| 37 | | 37 | ||
| CGH-R_Cingulum_(hippocampus)_right | | CGH-R_Cingulum_(hippocampus)_right | ||
− | | style="background: | + | | style="background:darkkhaki"| darkkhaki |
|- | |- | ||
| 38 | | 38 | ||
| CGH-L_Cingulum_(hippocampus)_left | | CGH-L_Cingulum_(hippocampus)_left | ||
− | | style="background: | + | | style="background:darkkhaki"| darkkhaki |
|- | |- | ||
| 39 | | 39 | ||
| FX-R_Fornix_Stria_terminalis_right | | FX-R_Fornix_Stria_terminalis_right | ||
− | | style="background: | + | | style="background:darkgoldenrod"| darkgoldenrod |
|- | |- | ||
| 40 | | 40 | ||
| FX-L_Fornix_Stria_terminalis_left | | FX-L_Fornix_Stria_terminalis_left | ||
− | | style="background: | + | | style="background:darkgoldenrod"| darkgoldenrod |
|- | |- | ||
| 41 | | 41 | ||
| SLF-R_Superior_longitudinal_fasciculus_right | | SLF-R_Superior_longitudinal_fasciculus_right | ||
− | | style="background: | + | | style="background:lightgray"| lightgray |
|- | |- | ||
| 42 | | 42 | ||
| SLF-L_Superior_longitudinal_fasciculus_left | | SLF-L_Superior_longitudinal_fasciculus_left | ||
− | | style="background: | + | | style="background:lightgray"| lightgray |
|- | |- | ||
| 43 | | 43 | ||
| SFO-R_Superior_fronto-occipital_fasciculus_right | | SFO-R_Superior_fronto-occipital_fasciculus_right | ||
− | | style="background: | + | | style="background:darkgrey"| darkgrey |
|- | |- | ||
| 44 | | 44 | ||
| SFO-R_Superior_fronto-occipital_fasciculus_left | | SFO-R_Superior_fronto-occipital_fasciculus_left | ||
− | | style="background: | + | | style="background:darkgrey"| darkgrey |
|- | |- | ||
| 45 | | 45 | ||
| IFO-R_Inferior_fronto-occipital_fasciculus_right | | IFO-R_Inferior_fronto-occipital_fasciculus_right | ||
− | | style="background: | + | | style="background:gray"| gray |
|- | |- | ||
| 46 | | 46 | ||
| IFO-L_Inferior_fronto-occipital_fasciculus_left | | IFO-L_Inferior_fronto-occipital_fasciculus_left | ||
− | | style="background: | + | | style="background:gray"| gray |
|- | |- | ||
| 47 | | 47 | ||
| UNC-R_Uncinate_fasciculus_right | | UNC-R_Uncinate_fasciculus_right | ||
− | | style="background: | + | | style="background:brown"| brown |
|- | |- | ||
| 48 | | 48 | ||
| UNC-L_Uncinate_fasciculus_left | | UNC-L_Uncinate_fasciculus_left | ||
− | | style="background: | + | | style="background:brown"| brown |
|- | |- | ||
| 49 | | 49 | ||
− | | TAP- | + | | TAP-R_Tapetum_right |
− | | style="background: | + | | style="background:mistyrose"| mistyrose |
|- | |- | ||
| 50 | | 50 | ||
− | | TAP- | + | | TAP-L_Tapetum_left |
− | | style="background: | + | | style="background:mistyrose"| mistyrose |
|} | |} |
Latest revision as of 17:31, 19 May 2010
Home < Slicer3:Mori-Atlas labelsBack to LUTs and Ontologies
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format. WARNING: the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.
- Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I
- Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II
- Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III
- List
Look-up Table for the Mori WM Atlas labels
Work in progress.
integer_label | text_label | color |
---|---|---|
0 | Background | rgba(0,0,0,0) |
1 | MCP_Middle_cerebellar_peduncle | gold |
2 | PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype | navajowhite |
3 | GCC_Genu_of_corpus_callosum | plum |
4 | BCC_Body_of_corpus_callosum | pink |
5 | SCC_Splenium_of_corpus_callosum | deeppink |
6 | FX_Fornix_(column_and_body_of_fornix) | peru |
7 | CST-R_Corticospinal_tract_right | tan |
8 | CST-L_Corticospinal_tract_left | tan |
9 | ML-R_Medial_lemniscus_right | mediumspringgreen |
10 | ML-L_Medial_lemniscus_left | mediumspringgreen |
11 | ICP-R_Inferior_cerebellar_peduncle_right | palegreen |
12 | ICP-L_Inferior_cerebellar_peduncle_left | palegreen |
13 | SCP-R_Superior_cerebellar_peduncle_right | bisque |
14 | SCP-L_Superior_cerebellar_peduncle_left | bisque |
15 | CP-R_Cerebral_peduncle_right | khaki |
16 | CP-L_Cerebral_peduncle_left | khaki |
17 | ALIC-R_Anterior_limb_of_internal_capsule_right | lightskyblue |
18 | ALIC-L_Anterior_limb_of_internal_capsule_left | lightskyblue |
19 | PLIC-R_Posterior_limb_of_internal_capsule_right | dodgerblue |
20 | PLIC-L_Posterior_limb_of_internal_capsule_left | dodgerblue |
21 | RLIC-R_Retrolenticular_part_of_internal_capsule_right | deepskyblue |
22 | RLIC-L_Retrolenticular_part_of_internal_capsule_left | deepskyblue |
23 | ACR-R_Anterior_corona_radiata_right | powderblue |
24 | ACR-L_Anterior_corona_radiata_left | powderblue |
25 | SCR-R_Superior_corona_radiata_right | blue |
26 | SCR-L_Superior_corona_radiata_left | blue |
27 | PCR-R_Posterior_corona_radiata_right | skyblue |
28 | PCR-L_Posterior_corona_radiata_left | skyblue |
29 | PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right | sandybrown |
30 | PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left | sandybrown |
31 | SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right | peachpuff |
32 | SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left | peachpuff |
33 | EC-R_External_capsule_right | darksalmon |
34 | EC-L_External_capsule_left | darksalmon |
35 | CGC-R_Cingulum_(cingulate_gyrus)_right | mediumseagreen |
36 | CGC-L_Cingulum_(cingulate_gyrus)_left | mediumseagreen |
37 | CGH-R_Cingulum_(hippocampus)_right | darkkhaki |
38 | CGH-L_Cingulum_(hippocampus)_left | darkkhaki |
39 | FX-R_Fornix_Stria_terminalis_right | darkgoldenrod |
40 | FX-L_Fornix_Stria_terminalis_left | darkgoldenrod |
41 | SLF-R_Superior_longitudinal_fasciculus_right | lightgray |
42 | SLF-L_Superior_longitudinal_fasciculus_left | lightgray |
43 | SFO-R_Superior_fronto-occipital_fasciculus_right | darkgrey |
44 | SFO-R_Superior_fronto-occipital_fasciculus_left | darkgrey |
45 | IFO-R_Inferior_fronto-occipital_fasciculus_right | gray |
46 | IFO-L_Inferior_fronto-occipital_fasciculus_left | gray |
47 | UNC-R_Uncinate_fasciculus_right | brown |
48 | UNC-L_Uncinate_fasciculus_left | brown |
49 | TAP-R_Tapetum_right | mistyrose |
50 | TAP-L_Tapetum_left | mistyrose |