Difference between revisions of "Documentation/Nightly"

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<noinclude>{{documentation/versioncheck}}
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__NOTOC__
 
__NOTOC__
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{{documentation/versionlist}}
 
{{documentation/versionlist}}
  
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{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"
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{| width="100%" cellspacing="7" cellpadding="2" border="0" align="center" valign="top"
 
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|-  
 
|-  
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|valign="top"|
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| valign="top" |
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span>
 
----
 
----
−
* [[Documentation/{{documentation/version}}/Training|Training pages]]
 
−
: Information on how to use Slicer {{documentation/version}}
 
  
−
* [[Documentation/{{documentation/version}}/FAQ|FAQ]]
+
*[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/getting_started.html Getting started]
−
: Set of common questions/answers
+
 
−
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives]
+
:Quick overview about Slicer
 +
 
 +
*[[Documentation/{{documentation/version}}/Training|Training pages]]
 +
 
 +
:Information on how to use Slicer {{documentation/version}}
 +
 
 +
*[[Documentation/{{documentation/version}}/FAQ|FAQ]]
 +
 
 +
:Set of common questions/answers
 +
 
 +
*[https://discourse.slicer.org Discussion Forum]
 +
 
 +
:The most effective way to get help from the community
 +
 
 +
<!--
 +
* [http://slicer-users.65878.n3.nabble.com/ Search users mailing list]
 +
-->
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span>
 
----
 
----
−
* [[Documentation/{{documentation/version}}/Report a problem|Report a problem]] / [[Documentation/{{documentation/version}}/Create_a_feature_request|Create a feature request]]{{new}}
+
 
 +
*[[Documentation/{{documentation/version}}/Report a problem|Report a problem]] / [[Documentation/{{documentation/version}}/Create_a_feature_request|Create a feature request]]{{new}}
 +
 
 
----
 
----
 
{{:{{FULLPAGENAME}}/SlicerApplication}}
 
{{:{{FULLPAGENAME}}/SlicerApplication}}
  
−
|bgcolor="#CCCCCC"|
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| bgcolor="#CCCCCC" |
−
|valign="top"|
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| valign="top" |
 
----
 
----
−
<span style="color: #555555; font-size: 18px; font-weight: bold;">Module Categories</span>
+
<span style="color: #555555; font-size: 18px; font-weight: bold;">Modules</span>
 
----
 
----
−
* [[#Core Modules|Core Modules]]
+
 
−
* [[#Wizards|Wizards]]
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{| width="100%" cellspacing="7" cellpadding="2"
−
* [[#Informatics|Informatics]]
+
 
−
* [[#Registration|Registration]]
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|- style="vertical-align:top; border-style:hidden;"
−
* [[#Segmentation|Segmentation]]
+
 
−
* [[#Quantification|Quantification]]
+
| width="5%" |
−
* [[#Diffusion|Diffusion]]
+
&nbsp;
−
* [[#IGT|IGT]]
+
 
−
* [[#Filtering|Filtering]]
+
| width="45%" |
−
* [[#Surface Models|Surface Models]]
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[[Image:DataIcon.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/data.html Data]
−
* [[#Converters|Converters]]
+
<br />
−
* [[#Endoscopy|Endoscopy]]
+
 
−
* [[#Work in Progress| Work in Progress]]
+
[[Image:DataStoreIcon_128.png|32px]] [[{{FULLPAGENAME}}/Modules/DataStore|Data Store]]
−
* [[#Developer Tools|Developer Tools]]
+
<br />
−
* [[#Legacy|Legacy]]
+
 
 +
[[Image:DICOM.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/dicom.html DICOM]
 +
<br />
 +
 
 +
[[Image:Markups.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/markups.html Markups]
 +
<br />
 +
 
 +
[[Image:SlicerModels-Small.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/models.html Models]
 +
<br />
 +
 
 +
[[Image:SceneViews.png|32px]] [[{{FULLPAGENAME}}/Modules/SceneViews|Scene Views]]
 +
<br />
 +
 
 +
[[Image:Segmentations.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/segmentations.html Segmentations]
 +
<br />
 +
 
 +
[[Image:SegmentEditor.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/segmenteditor.html Segment Editor]
 +
<br />
 +
 
 +
[[Image:Transforms.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/transforms.html Transforms]
 +
<br />
 +
 
 +
[[Image:ViewControllersIcon.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/viewcontrollers.html View Controllers]
 +
<br />
 +
 
 +
[[Image:VolumeRendering.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/volumerendering.html Volume Rendering]
 +
<br />
 +
 
 +
[[Image:SlicerVolume-Small.png|32px]] [{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/volumes.html Volumes]
 +
<br />
 +
 
 +
[[Image:Welcome.png|32px]] [https://slicer.readthedocs.io/en/latest/user_guide/modules/slicerwelcome.html Welcome to Slicer]
 +
<br />
 +
 
 +
| width="50%" |
 +
 
 +
{{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}}
 +
 
 +
|}
 +
 
 +
 
 +
<!--
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Extension Categories</span> {{new}}
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Extension Categories</span> {{new}}
 
----
 
----
 
{{note}} What are these categories ? See [[Documentation/{{documentation/version}}/Extensions/CatalogPolicies|here]]
 
{{note}} What are these categories ? See [[Documentation/{{documentation/version}}/Extensions/CatalogPolicies|here]]
−
 
+
-->
−
* [[#Cat_1|Category 1]]
+
| bgcolor="#CCCCCC" |
−
* [[#Cat_2|Category 2]]
+
| valign="top" |
−
* [[#Cat_3|Category 3]]
 
−
 
 
−
|bgcolor="#CCCCCC"|
 
−
|valign="top"|
 
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span>
 
----
 
----
−
* [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]]{{updated}}
 
−
: Source code, contribute patch, develop modules
 
  
 +
*[[Documentation/Nightly/Developers | Information for Software Developers]]{{updated}}
 +
 +
:Source code, contribute patch, develop modules
 +
 +
<!--
 
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives]
 
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives]
 
: Intended for discussion of programming related questions
 
: Intended for discussion of programming related questions
 +
-->
 
----
 
----
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
 
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span>
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<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
 
<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] -->
  
−
* [[Documentation/{{documentation/version}}/HowTo|Documentation guidelines]]
+
*[[Documentation/{{documentation/version}}/HowTo|Documentation guidelines]]
−
: Slicer user documentation principle and guidelines
+
 
 +
:Slicer user documentation principle and guidelines
 +
 
 +
*[[Slicer4:VisualBlog|Visual blog]]
  
−
* [[Slicer4:VisualBlog|Visual blog]]
+
:Set of screenshots showing Slicer in action.
−
: Set of screenshots showing Slicer in action.
 
  
−
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]]
+
*[[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]]
−
: Platform specific issues and considerations
 
  
−
* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments]
+
:Platform specific issues and considerations
  
−
* [http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library]
+
*[[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]]
−
: Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.  
+
 
 +
*[[Documentation/Nightly/Registration/RegistrationLibrary|Registration Library]]
 +
 
 +
:Real-life example cases of using the Slicer registration tools,  incl. datasets and step-by-step instructions to follow and try yourself.
 +
 
 +
----
 +
<span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages</span>
 +
----
 +
{{:{{FULLPAGENAME}}/Lang/ES}}
 +
  
 
|}
 
|}
  
−
{{:{{FULLPAGENAME}}/Modules}}
+
<!--
 +
{{:{{FULLPAGENAME}}/ModuleExtensionListing}}
 +
-->
 +
 
 +
{| width="100%" cellspacing="7" cellpadding="2" border="0" align="center" valign="top"
 +
 
 +
|- style="vertical-align:top; border-style:hidden;"
 +
 
 +
|
 +
 
 +
{{:{{FULLPAGENAME}}/ModuleExtensionListing/Extensions_by_name}}
 +
 
 +
|
 +
<br />
 +
<br />
 +
=Modules by category=
 +
 
 +
==Converters==
 +
 
 +
*[[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable)</small>
 +
*[[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli)</small>
 +
*[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/vectortoscalarvolume.html Vector To Scalar Volume]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOM Series]]    <small>(cli)</small>
 +
 
 +
==Diffusion==
 +
 
 +
*[[Documentation/Nightly/Modules/DMRIInstall|DMRI Install]]    <small>(scripted)</small>
  
−
{{:{{FULLPAGENAME}}/Extensions}}
+
<span id="Modules_by_category_Diffusion_Diffusion_Data_Conversion"></span>
 +
===Diffusion Data Conversion===
 +
 
 +
*DWI Convert    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Diffusion_Diffusion_Tensor_Images"></span>
 +
===Diffusion Weighted Images===
 +
 
 +
*BRAINS DWI Cleanup    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Diffusion_Import_and_Export"></span>
 +
===Import and Export===
 +
 
 +
*DWI Convert    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Diffusion_Process"></span>
 +
===Utilities===
 +
 
 +
*BRAINS DWI Cleanup    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTI Volume]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWI Volume]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Endoscopy"></span>
 +
==Endoscopy==
 +
 
 +
*[[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted)</small>
 +
 
 +
<span id="Modules_by_category_Filter"></span>
 +
==Filter==
 +
 
 +
*IslandRemoval    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Filtering"></span>
 +
==Filtering==
 +
 
 +
*[[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4 ITK Bias Field Correction]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Filtering_Arithmetic"></span>
 +
===Arithmetic===
 +
 
 +
*[[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Filtering_Denoising"></span>
 +
===Denoising===
 +
 
 +
*[[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Filtering_Morphology"></span>
 +
===Morphology===
 +
 
 +
*[[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_IGT"></span>
 +
==IGT==
 +
 
 +
*[[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLink IF]]    <small>(loadable)</small>
 +
 
 +
<span id="Modules_by_category_Informatics"></span>
 +
==Informatics==
 +
 
 +
*[[Documentation/Nightly/Modules/SEG2NRRD|SEG 2 NRRD]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable)</small>
 +
*[[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable)</small>
 +
*DumpSEGFrame    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/Terminologies|Terminologies]]    <small>(loadable)</small>
 +
*[[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable)</small>
 +
*[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/dicom.html DICOM]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable)</small>
 +
*[[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable)</small>
 +
*[[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable)</small>
 +
 
 +
<span id="Modules_by_category_Informatics_Converters"></span>
 +
===Converters===
 +
 
 +
*[[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Legacy"></span>
 +
==Legacy==
 +
<span id="Modules_by_category_Legacy_Converters"></span>
 +
===Converters===
 +
 
 +
*[[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Legacy_Filtering"></span>
 +
===Filtering===
 +
 
 +
*[[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Legacy_Registration"></span>
 +
===Registration===
 +
 
 +
*Test Grid Transform Registration    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli)</small>
 +
 
 +
==MultiVolume Support==
 +
 
 +
*[https://slicer.readthedocs.io/en/latest/user_guide/modules/multivolumeimporter.html MultiVolume Importer]    <small>(scripted)</small>
 +
*[https://slicer.readthedocs.io/en/latest/user_guide/modules/multivolumeexplorer.html MultiVolume Explorer]    <small>(loadable)</small>
 +
 
 +
<span id="Modules_by_category_Quantification"></span>
 +
 
 +
==Quantification==
 +
 
 +
*[[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]]    <small>(cli)</small>
 +
*SegmentStatistics    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted)</small>
 +
*BRAINSLabelStats    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted)</small>
 +
 
 +
<span id="Modules_by_category_Registration"></span>
 +
==Registration==
 +
 
 +
*[[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable)</small>
 +
*BRAINSResize    <small>(cli)</small>
 +
*PerformMetricTest    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/BRAINSResample|BRAINS Resample]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/BRAINSFit|General registration (BRAINS)]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Registration_Specialized"></span>
 +
===Specialized===
 +
 
 +
*[[Documentation/Nightly/Modules/ACPCTransform|AC-PC Transform]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINS Demon Warp]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable)</small>
 +
*VBRAINSDemonWarp    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Segmentation"></span>
 +
==Segmentation==
 +
 
 +
*[[Documentation/Nightly/Modules/Segmentations|Segmentations]]    <small>(loadable)</small>
 +
*[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/segmenteditor.html Segment Editor]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable)</small>
 +
 
 +
*EMSegmentQuick    <small>(loadable)</small>
 +
 
 +
<span id="Modules_by_category_Segmentation_Specialized"></span>
 +
===Specialized===
 +
 
 +
*BRAINS ROI Auto    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli)</small>
 +
*EMSegment CommandLine    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Surface_Models"></span>
 +
 
 +
==Surface Models==
 +
 
 +
*[[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ModelToLabelMap|Model To LabelMap]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMap Smoothing]]    <small>(cli)</small>
 +
*[[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Utilities"></span>
 +
==Utilities==
 +
 
 +
*[[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable)</small>
 +
*[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/dicompatcher.html DICOM Patcher]    <small>(scripted)</small>
 +
*BRAINS Strip Rotation    <small>(cli)</small>
 +
*EMSegment Transform To New Format    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Utilities_BRAINS"></span>
 +
===BRAINS===
 +
 
 +
*BRAINS Transform Convert    <small>(cli)</small>
 +
 
 +
<span id="Modules_by_category_Wizards"></span>
 +
==Wizards==
 +
 
 +
*[[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted)</small>
 +
 
 +
<span id="Modules_by_category_Developer_Tools"></span>
 +
==Developer Tools==
 +
 
 +
*[[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable)</small>
 +
*[[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli)</small>
 +
*[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/extensionwizard.html Extension Wizard]    <small>(scripted)</small>
 +
*[[Documentation/Nightly/Modules/EventBroker|Event Broker]]
 +
*Double Arrays    <small>(loadable)</small>
 +
 
 +
<span id="Modules_by_category_Developer_Tools_DICOM_Plugins"></span>
 +
===DICOM Plugins===
 +
 
 +
*DICOMParametricMapPlugin
 +
*DicomUltrasoundPlugin
 +
*DICOMSegmentationPlugin
 +
*DICOMSlicerDataBundlePlugin
 +
*DICOMTID1500Plugin
 +
*[[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 +
*DICOMScalarVolumePlugin
 +
*DICOMDiffusionVolumePlugin
 +
*DICOMLongitudinalPETCTPlugin
 +
*DicomSroImportPlugin
 +
*[[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 +
*DicomRtImportExportPlugin
 +
*MultiVolumeImporterPlugin
 +
 
 +
|}

Latest revision as of 02:47, 14 November 2022

Home < Documentation < Nightly


For the latest Slicer documentation, visit the read-the-docs.



Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS

Where to start ?

Quick overview about Slicer
Information on how to use Slicer Nightly
Set of common questions/answers
The most effective way to get help from the community

How to

Slicer Application


Modules

 

DataIcon.png Data

DataStoreIcon 128.png Data Store

DICOM.png DICOM

Markups.png Markups

SlicerModels-Small.png Models

SceneViews.png Scene Views

Segmentations.png Segmentations

SegmentEditor.png Segment Editor

Transforms.png Transforms

ViewControllersIcon.png View Controllers

VolumeRendering.png Volume Rendering

SlicerVolume-Small.png Volumes

Welcome.png Welcome to Slicer




Developers Corner

Source code, contribute patch, develop modules

Miscellaneous

Slicer user documentation principle and guidelines
Set of screenshots showing Slicer in action.
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Documentation in other languages




Extensions by name

83 extensions:




Modules by category

Converters

Diffusion

Diffusion Data Conversion

  • DWI Convert (cli)

Diffusion Weighted Images

  • BRAINS DWI Cleanup (cli)

Import and Export

  • DWI Convert (cli)

Utilities

Endoscopy

Filter

  • IslandRemoval (cli)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

MultiVolume Support

Quantification

Registration

Specialized

Segmentation

  • EMSegmentQuick (loadable)

Specialized

Surface Models

Utilities

BRAINS

  • BRAINS Transform Convert (cli)

Wizards

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin
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