Difference between revisions of "Documentation/4.1/Training"

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__TOC__
 
__TOC__
  
  
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=Introduction: Slicer 4.0 Tutorials=
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=Introduction: Slicer {{documentation/version}} Tutorials=
  
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*This page contains "How to" tutorials with matched sample data sets. They demonstrate how to use the 3D Slicer environment (version 4.0 release) to accomplish certain tasks.  
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*This page contains "How to" tutorials with matched sample data sets. They demonstrate how to use the 3D Slicer environment (version {{documentation/version}} release) to accomplish certain tasks.  
 
*For tutorials for other versions of Slicer, please visit the [[Training| Slicer training portal]].
 
*For tutorials for other versions of Slicer, please visit the [[Training| Slicer training portal]].
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*For "reference manual" style documentation, please visit the [[Documentation/4.0|Slicer 4.0 documentation page]]
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*For "reference manual" style documentation, please visit the [[Documentation/{{documentation/version}}|Slicer {{documentation/version}} documentation page]]
 
*For questions related to the Slicer4 Compendium, please send an e-mail to '''[http://www.na-mic.org/Wiki/index.php/User:SPujol Sonia Pujol, Ph.D]'''
 
*For questions related to the Slicer4 Compendium, please send an e-mail to '''[http://www.na-mic.org/Wiki/index.php/User:SPujol Sonia Pujol, Ph.D]'''
  
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*The [[media:Slicer4minute-tutorial_SoniaPujol-mj.pdf|Slicer4Minute tutorial]] is a brief introduction to the advanced 3D visualization capabilities of Slicer4.0.
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*The [[media:Slicer4minute-tutorial_SoniaPujol-mj.pdf|Slicer4Minute tutorial]] is a brief introduction to the advanced 3D visualization capabilities of Slicer 4.0.
 
*Author: Sonia Pujol, Ph.D.
 
*Author: Sonia Pujol, Ph.D.
 
*Audience: First time users who want to discover Slicer in 4 minutes.
 
*Audience: First time users who want to discover Slicer in 4 minutes.
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=Summer 2012 Tutorial contest (under construction)=
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==Automatic Left Atrial Scar Segmenter ==
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{|width="100%"
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*[http://wiki.na-mic.org/Wiki/index.php/CARMA-LA-Scar_TutorialContestSummer2012 Automatic LA Scar Detection]
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*Authors:  Greg Gardner, Josh Cates, SCI, Utah
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*Dataset: [http://wiki.na-mic.org/Wiki/index.php/File:CARMA-LA-Scar_TutorialContestSummer2012.zip CARMA-LA-Scar data]
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|align="right"|
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[[image:Gardner-CARMA-LA-Scar-2012-fig2.png|250px|]]
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|}
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==Qualitative and quantitative comparison of  two RT dose distributions==
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{|width="100%"
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|
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*[http://www.na-mic.org/Wiki/index.php/File:PlastimatchDose_TutorialContestSummer2012.pdf Qualitative and Quantitative Comparison of Two RT Dose Distributions]
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*Authors:  James Shackleford, Nadya Shusharina, Greg Sharp, MGH
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|align="right"|
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[[image:Shackleford-PlastimatchDose_TutorialContestSummer2012-fig.png|250px]]
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|}
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==Dose accumulation for adaptive radiation therapy==
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{|width="100%"
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|
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*[http://www.na-mic.org/Wiki/index.php/File:DoseAccumulationforAdaptiveRadiationTherapy_TutorialContestSummer2012.pdf Dose Accumulation for Adaptive Radiation Therapy]
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*Authors:  Kevin Wang, Csaba Pinter, Andras Lasso, Princess Margaret Hospital, Queen's University
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|align="right"|
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[[image:Wang-DoseAccumulationforAdaptiveRadiationTherapy_TutorialContestSummer2012-fig1.png|250px|]]
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|}
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==WebGL Export==
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{|width="100%"
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|
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*[http://www.na-mic.org/Wiki/index.php/File:WebGLExport_TutorialContestSummer2012.pdf  WebdGLExport]
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*Authors:  Nicolas Rannou, Daniel Haehn, Boston Children's Hospital
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|align="right"|
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[[image:Rannou-WebGLExport_TutorialContestSummer2012-fig1.png|250px]]
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|}
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==OpenIGTLink==
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{|width="100%"
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|
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*[http://www.slicer.org/w/img_auth.php/f/f1/OpenIGTLinkTutorial_Slicer4.1.0_JunichiTokuda_Apr2012.pdf Connecting IGT Device with OpenIGTLink]
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*Authors:  Junichi Tokuda, BWH
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|align="right"|
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[[image:Tokuda-OpenIGTLink_TutorialContestSummer2012-fig2.png|250px]]
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|}
  
 
=Additional resources =
 
=Additional resources =
 
{|width="100%"
 
{|width="100%"
 
|
 
|
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*This Intro to Slicer4.0 [http://vimeo.com/37671358 webinar] provides an introduction to 3DSlicer, and demonstrates core functionalities such as loading, visualizing and saving data. Basic processing tools, including manual registration, manual segmentation and tractography tools are also highlighted. This webinar is a general overview. For in depth information see the modules above and the documentation pages.
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* This ''Slicer 4.1 [http://vimeo.com/41096643 webinar]'' presents the new features and improvements of the release, and a brief overview of work for the next release.
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* Authors: Steve Pieper Ph.D.
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* Audience: First time users and developers interested in Slicer 4.1 new features.
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* Length: 0h20m
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|align="right"|[[Image:Webinar-Slicer-4.1.png|250px]]
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|-
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|
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*This ''Intro to Slicer 4.0 [http://vimeo.com/37671358 webinar]'' provides an introduction to 3DSlicer, and demonstrates core functionalities such as loading, visualizing and saving data. Basic processing tools, including manual registration, manual segmentation and tractography tools are also highlighted. This webinar is a general overview. For in depth information see the modules above and the documentation pages.
 
*Authors: Julien Finet, M.S., Steve Pieper, Ph.D., Jean-Christophe Fillion-Robin, M.S.  
 
*Authors: Julien Finet, M.S., Steve Pieper, Ph.D., Jean-Christophe Fillion-Robin, M.S.  
 
*Audience: First time users interested in a broad overview of Slicer’s features and tools.
 
*Audience: First time users interested in a broad overview of Slicer’s features and tools.
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|align="right"|
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*Length: 1h20m
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[[Image:Webinar.png|250px]]
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|align="right"|[[Image:Webinar.png|250px]]
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|-
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|
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*The ''[http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library]'' provides many real-life example cases of using the Slicer registration tools. They include the dataset and step-by-step instructions to follow and try yourself.
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:Author: Dominik Meier, Ph.D.
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:Audience:  users interested learning/applying Slicer image registration technology
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|align="right"|[[Image:RegLib Banner.png|250px]]
 
|}
 
|}

Latest revision as of 12:30, 27 November 2019

Home < Documentation < 4.1 < Training


For the latest Slicer documentation, visit the read-the-docs.



Introduction: Slicer 4.1 Tutorials

  • This page contains "How to" tutorials with matched sample data sets. They demonstrate how to use the 3D Slicer environment (version 4.1 release) to accomplish certain tasks.
  • For tutorials for other versions of Slicer, please visit the Slicer training portal.
  • For "reference manual" style documentation, please visit the Slicer 4.1 documentation page
  • For questions related to the Slicer4 Compendium, please send an e-mail to Sonia Pujol, Ph.D


General Introduction

Slicer Welcome Tutorial

  • The SlicerWelcome tutorial is an introduction to Slicer based on the Welcome module.
  • Author: Sonia Pujol, Ph.D.
  • Audience: First time users who want a general introduction to the software.

SlicerWelcome tutorial

Slicer4Minute Tutorial

  • The Slicer4Minute tutorial is a brief introduction to the advanced 3D visualization capabilities of Slicer 4.0.
  • Author: Sonia Pujol, Ph.D.
  • Audience: First time users who want to discover Slicer in 4 minutes.
  • The Slicer4Minute dataset contains an MR scan of the brain and 3D reconstructions of the anatomy
Slicer4Minute tutorial

Slicer4 Data Loading and 3D Visualization

Slicer4DataLoading tutorial.png

Tutorials for software developers

Slicer4 Programming Tutorial

HelloPythonTutorial.png

Specific functions

Slicer4 Diffusion Tensor Imaging Tutorial

  • The Diffusion Tensor Imaging Tutorial course guides through the basics of loading Diffusion Weighted images in Slicer, estimating tensors and generating fiber tracts.
  • Author: Sonia Pujol, Ph.D.
  • Audience: End-users and developers
  • The DTI dataset contains an MR Diffusion Weighted Imaging scan of the brain.
Slicer4DTI Tutorial.png

Slicer4 Neurosurgical Planning Tutorial

NeurosurgicalPlanningTutorial.png


Slicer4 3D Visualization of DICOM images for Radiology Applications

  • The Slicer4RSNA course guides through 3D data loading and visualization of DICOM images for Radiology Applications in Slicer4.
  • Author: Sonia Pujol, Ph.D., Kitt Shaffer, M.D., Ph.D.
  • Audience: Radiologists and users of Slicer who need a more comprehensive overview over Slicer4 visualization capabilities.
  • The Slicer4RSNAdataset1 and Slicer4RSNAdataset2 contain a series of MR and CT scans, and 3D models of the brain, lung and liver.
Slicer4RSNA 2.png


Slicer4 Quantitative Imaging tutorial

  • The Slicer4 Quantitative Imaging tutorial guides through the use for Slicer for quantifying small volumetric changes in slow-growing tumors, and for calculating Standardized Uptake Value (SUV) from PET/CT data.
  • Authors: Jeffrey Yap, Ph.D., Ron Kikinis, M.D., Randy Gollub, M.D., Ph.D., Wendy Plesniak, Ph.D., Nicole Aucoin, B.Sc., Sonia Pujol, Ph.D., Valerie Humblet, Ph.D., Andriy Fedorov, Ph.D., Kilian Poh, Ph.D., Ender Konugolu, Ph.D.
  • Audience: Radiologists and users of Slicer who need a more comprehensive overview over Slicer4 quantitative imaging capabilities.
  • The PETCTFusion and Change Tracker datasets contain a series of MR, CT and PET data.
Slicer4 QuantitativeImaging.png


Summer 2012 Tutorial contest (under construction)

Automatic Left Atrial Scar Segmenter

Gardner-CARMA-LA-Scar-2012-fig2.png

Qualitative and quantitative comparison of two RT dose distributions

Shackleford-PlastimatchDose TutorialContestSummer2012-fig.png

Dose accumulation for adaptive radiation therapy

Wang-DoseAccumulationforAdaptiveRadiationTherapy TutorialContestSummer2012-fig1.png

WebGL Export

  • WebdGLExport
  • Authors: Nicolas Rannou, Daniel Haehn, Boston Children's Hospital

Rannou-WebGLExport TutorialContestSummer2012-fig1.png

OpenIGTLink

Tokuda-OpenIGTLink TutorialContestSummer2012-fig2.png

Additional resources

  • This Slicer 4.1 webinar presents the new features and improvements of the release, and a brief overview of work for the next release.
  • Authors: Steve Pieper Ph.D.
  • Audience: First time users and developers interested in Slicer 4.1 new features.
  • Length: 0h20m
 Webinar-Slicer-4.1.png
  • This Intro to Slicer 4.0 webinar provides an introduction to 3DSlicer, and demonstrates core functionalities such as loading, visualizing and saving data. Basic processing tools, including manual registration, manual segmentation and tractography tools are also highlighted. This webinar is a general overview. For in depth information see the modules above and the documentation pages.
  • Authors: Julien Finet, M.S., Steve Pieper, Ph.D., Jean-Christophe Fillion-Robin, M.S.
  • Audience: First time users interested in a broad overview of Slicer’s features and tools.
  • Length: 1h20m
 Webinar.png
  • The Slicer Registration Case Library provides many real-life example cases of using the Slicer registration tools. They include the dataset and step-by-step instructions to follow and try yourself.
Author: Dominik Meier, Ph.D.
Audience: users interested learning/applying Slicer image registration technology
 RegLib Banner.png
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