Difference between revisions of "Slicer3:ColorsFiducialsFreesurferModelmaker"
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== 2007 AHM Project Half Week == | == 2007 AHM Project Half Week == | ||
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| + | This page presents the work that was done by Nicole Aucoin at the 2007 Project Half Week. | ||
[http://wiki.na-mic.org/Wiki/index.php/2007_Project_Half_Week 2007 Project Half Week complete list of projects]. | [http://wiki.na-mic.org/Wiki/index.php/2007_Project_Half_Week 2007 Project Half Week complete list of projects]. | ||
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* [[Media:2007_Project_Half_Week_Slicer3FreeSurfer.ppt | FreeSurfer]] | * [[Media:2007_Project_Half_Week_Slicer3FreeSurfer.ppt | FreeSurfer]] | ||
* [[Media:2007_Project_Half_Week_Slicer3ModelMaker.ppt | ModelMaker]] | * [[Media:2007_Project_Half_Week_Slicer3ModelMaker.ppt | ModelMaker]] | ||
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| + | For current status on these modules, see [[Documentation|Documentation page]]. | ||
== Colors == | == Colors == | ||
Latest revision as of 02:34, 27 November 2019
Home < Slicer3:ColorsFiducialsFreesurferModelmaker2007 AHM Project Half Week
This page presents the work that was done by Nicole Aucoin at the 2007 Project Half Week.
2007 Project Half Week complete list of projects.
4 blocks presented during project week:
For current status on these modules, see Documentation page.
Colors
- MRML Color nodes implemented
- basic module UI done, display colours with scalar id, names, color box
- incorporated color node selector in volumes and models GUIs
- FreeSurfer default Heat, Green/Red look up tables are supported, as well as reading in default labels and annotation labels, and loading color tables from annotation files.
- Procedural color nodes expanded, support for vtkColorTransferFunction as well as vtkLookupTable in the viewer widget.
- Scalar overlays supported in the Models GUI, Display tab.
- TO DO: continue work on UI
Fiducials
- MRML Node for list implemented, GUI for module refined
- vtkGlyphSource2D subclassed for Slicer, StarBurst option integrated
- vtkSlicerGlyphSource2D usable in both the main viewer and in 2D slices
- 3D glyphs of various types implemented for the 3D viewer
- S. Pieper linked 2D and 3D fiducials, can drag fiducials in 2D
- Placing fiducials in the 3D window mostly complete
- TO DO: Support dragging fiducials in the 3D window
FreeSurfer
- MGH ITK Reader ported from NAMIC Sandbox, works as any other volume reader now
- Slicer 2.x source code ported as a Slicer 3 Library, used in Query Atlas scripts
- FreeSurfer .W surfaces and CURV surfaces are loadable through the Models GUI
- FreeSurfer scalar overlays are loadable via the Models Display GUI: thickness, curv, sulc, area, annot, and the new volume encoded scalars in MGH format
- vtkFSLookupTables integrated into MRML Color Nodes
- Added support to composite two scalar arrays into one
- color transfer functions support added to MRML Color Nodes for calculating transfer functions when composite two scalar arrays
- TODO: other volume format support through the GUI instead of just scriptable, support scalar overlay compositing through the GUI
ModelMaker
- Implemented as a Command Line Module
- Added option to write out a MRML file with display nodes giving color information (tries to pick a good default color node to get names from)
- TODO: waiting for support for XML files as input to the CLI modules so can use a defined vtkMRMLColorNode to name models
