Difference between revisions of "Documentation/4.8"
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− | [[Image:SegmentEditor.png|32px]] [ | + | [[Image:SegmentEditor.png|32px]] [http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html Segment Editor] |
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* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]] | * [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]] | ||
− | * [ | + | * [[Documentation/Nightly/Registration/RegistrationLibrary|Registration Library]] |
: Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. | : Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. | ||
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== Converters == | == Converters == | ||
− | * [[Documentation/Nightly/Modules/CropVolume| | + | * [[Documentation/Nightly/Modules/CropVolume|Crop Volume]] <small>(loadable)</small> |
− | * [[Documentation/Nightly/Modules/OrientScalarVolume| | + | * [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/VectorToScalarVolume| | + | * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/CreateDICOMSeries| | + | * [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOM Series]] <small>(cli)</small> |
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== Diffusion == | == Diffusion == | ||
− | * [[Documentation/Nightly/Modules/DMRIInstall| | + | * [[Documentation/Nightly/Modules/DMRIInstall|DMRI Install]] <small>(scripted)</small> |
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span> | <span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span> | ||
=== Diffusion Data Conversion === | === Diffusion Data Conversion === | ||
− | * | + | * DWI Convert <small>(cli)</small> |
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span> | <span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span> | ||
=== Diffusion Weighted Images === | === Diffusion Weighted Images === | ||
− | * | + | * BRAINS DWI Cleanup <small>(cli)</small> |
<span id='Modules_by_category_Diffusion_Import_and_Export'></span> | <span id='Modules_by_category_Diffusion_Import_and_Export'></span> | ||
=== Import and Export === | === Import and Export === | ||
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<span id='Modules_by_category_Diffusion_Process'></span> | <span id='Modules_by_category_Diffusion_Process'></span> | ||
=== Utilities === | === Utilities === | ||
− | * | + | * BRAINS DWI Cleanup <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ResampleDTIVolume| | + | * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTI Volume]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume| | + | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWI Volume]] <small>(cli)</small> |
<span id='Modules_by_category_Endoscopy'></span> | <span id='Modules_by_category_Endoscopy'></span> | ||
== Endoscopy == | == Endoscopy == | ||
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<span id='Modules_by_category_Filtering'></span> | <span id='Modules_by_category_Filtering'></span> | ||
== Filtering == | == Filtering == | ||
− | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection| | + | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4 ITK Bias Field Correction]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ImageLabelCombine| | + | * [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter| | + | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/CheckerBoardFilter| | + | * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ExtractSkeleton| | + | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/SimpleFilters| | + | * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/ThresholdScalarVolume| | + | * [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/HistogramMatching| | + | * [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] <small>(cli)</small> |
<span id='Modules_by_category_Filtering_Arithmetic'></span> | <span id='Modules_by_category_Filtering_Arithmetic'></span> | ||
=== Arithmetic === | === Arithmetic === | ||
− | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes| | + | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/AddScalarVolumes| | + | * [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/MaskScalarVolume| | + | * [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/SubtractScalarVolumes| | + | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/CastScalarVolume| | + | * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli)</small> |
<span id='Modules_by_category_Filtering_Denoising'></span> | <span id='Modules_by_category_Filtering_Denoising'></span> | ||
=== Denoising === | === Denoising === | ||
− | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion| | + | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion| | + | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/MedianImageFilter| | + | * [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter| | + | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli)</small> |
<span id='Modules_by_category_Filtering_Morphology'></span> | <span id='Modules_by_category_Filtering_Morphology'></span> | ||
=== Morphology === | === Morphology === | ||
− | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter| | + | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter| | + | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli)</small> |
<span id='Modules_by_category_IGT'></span> | <span id='Modules_by_category_IGT'></span> | ||
== IGT == | == IGT == | ||
− | * [[Documentation/Nightly/Modules/OpenIGTLinkIF| | + | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLink IF]] <small>(loadable)</small> |
<span id='Modules_by_category_Informatics'></span> | <span id='Modules_by_category_Informatics'></span> | ||
== Informatics == | == Informatics == | ||
− | * [[Documentation/Nightly/Modules/SEG2NRRD| | + | * [[Documentation/Nightly/Modules/SEG2NRRD|SEG 2 NRRD]] <small>(cli)</small> |
* [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable)</small> | ||
* [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable)</small> | ||
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* [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable)</small> | ||
* [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted)</small> | * [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted)</small> | ||
− | * [[Documentation/Nightly/Modules/SampleData| | + | * [[Documentation/Nightly/Modules/SampleData|Sample Data]] <small>(scripted)</small> |
* [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable)</small> | ||
* [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable)</small> | ||
* [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable)</small> | ||
− | * [[Documentation/Nightly/Modules/SubjectHierarchy| | + | * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable)</small> |
<span id='Modules_by_category_Informatics_Converters'></span> | <span id='Modules_by_category_Informatics_Converters'></span> | ||
=== Converters === | === Converters === | ||
− | * [[Documentation/Nightly/Modules/EncodeSEG| | + | * [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]] <small>(cli)</small> |
<span id='Modules_by_category_Legacy'></span> | <span id='Modules_by_category_Legacy'></span> | ||
== Legacy == | == Legacy == | ||
<span id='Modules_by_category_Legacy_Converters'></span> | <span id='Modules_by_category_Legacy_Converters'></span> | ||
=== Converters === | === Converters === | ||
− | * [[Documentation/Nightly/Modules/BSplineToDeformationField| | + | * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] <small>(cli)</small> |
<span id='Modules_by_category_Legacy_Filtering'></span> | <span id='Modules_by_category_Legacy_Filtering'></span> | ||
=== Filtering === | === Filtering === | ||
− | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter| | + | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ResampleScalarVolume| | + | * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli)</small> |
<span id='Modules_by_category_Legacy_Registration'></span> | <span id='Modules_by_category_Legacy_Registration'></span> | ||
=== Registration === | === Registration === | ||
− | * | + | * Test Grid Transform Registration <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration| | + | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] <small>(cli)</small> |
== MultiVolume Support == | == MultiVolume Support == | ||
− | * [[Documentation/Nightly/Modules/MultiVolumeImporter| | + | * [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolume Importer]] <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/MultiVolumeExplorer| | + | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolume Explorer]] <small>(loadable)</small> |
<span id='Modules_by_category_Quantification'></span> | <span id='Modules_by_category_Quantification'></span> | ||
== Quantification == | == Quantification == | ||
− | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation| | + | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] <small>(cli)</small> |
− | * | + | * Segment Statistics <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/LabelStatistics| | + | * [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]] <small>(scripted)</small> |
* BRAINSLabelStats <small>(cli)</small> | * BRAINSLabelStats <small>(cli)</small> | ||
− | * [[Documentation/Nightly/Modules/DataProbe| | + | * [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted)</small> |
<span id='Modules_by_category_Registration'></span> | <span id='Modules_by_category_Registration'></span> | ||
== Registration == | == Registration == | ||
+ | *[[:Category:Documentation/Nightly/Modules/Registration|Introduction to Registration]] <small>(by Dominik Meier)</small> | ||
* [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable)</small> | ||
* BRAINSResize <small>(cli)</small> | * BRAINSResize <small>(cli)</small> | ||
* PerformMetricTest <small>(cli)</small> | * PerformMetricTest <small>(cli)</small> | ||
− | * [[Documentation/Nightly/Modules/LandmarkRegistration| | + | * [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/BRAINSResample| | + | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINS Resample]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/BRAINSFit| | + | * [[Documentation/Nightly/Modules/BRAINSFit|General registration (BRAINS)]] <small>(cli)</small> |
<span id='Modules_by_category_Registration_Specialized'></span> | <span id='Modules_by_category_Registration_Specialized'></span> | ||
=== Specialized === | === Specialized === | ||
− | * [[Documentation/Nightly/Modules/ACPCTransform| | + | * [[Documentation/Nightly/Modules/ACPCTransform|AC-PC Transform]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/FiducialRegistration| | + | * [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/BRAINSDemonWarp| | + | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINS Demon Warp]] <small>(cli)</small> |
* [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable)</small> | ||
* VBRAINSDemonWarp <small>(cli)</small> | * VBRAINSDemonWarp <small>(cli)</small> | ||
<span id='Modules_by_category_Segmentation'></span> | <span id='Modules_by_category_Segmentation'></span> | ||
== Segmentation == | == Segmentation == | ||
− | * | + | * [[Documentation/Nightly/Modules/Segmentations|Segmentations]] <small>(loadable)</small> |
− | * [ | + | * [http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html Segment Editor] <small>(scripted)</small> |
* [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted)</small> | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted)</small> | ||
− | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation| | + | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli)</small> |
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable)</small> | * [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable)</small> | ||
+ | * EMSegmentQuick <small>(loadable)</small> | ||
<span id='Modules_by_category_Segmentation_Specialized'></span> | <span id='Modules_by_category_Segmentation_Specialized'></span> | ||
=== Specialized === | === Specialized === | ||
− | * | + | * BRAINS ROI Auto <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter| | + | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli)</small> |
− | * | + | * EMSegment CommandLine <small>(cli)</small> |
<span id='Modules_by_category_Surface_Models'></span> | <span id='Modules_by_category_Surface_Models'></span> | ||
+ | |||
== Surface Models == | == Surface Models == | ||
− | * [[Documentation/Nightly/Modules/SurfaceToolbox| | + | * [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/GrayscaleModelMaker| | + | * [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ModelMaker| | + | * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ModelToLabelMap| | + | * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To LabelMap]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/MergeModels| | + | * [[Documentation/Nightly/Modules/MergeModels|Merge Models]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/LabelMapSmoothing| | + | * [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMap Smoothing]] <small>(cli)</small> |
− | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel| | + | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli)</small> |
<span id='Modules_by_category_Utilities'></span> | <span id='Modules_by_category_Utilities'></span> | ||
== Utilities == | == Utilities == | ||
− | * [[Documentation/Nightly/Modules/ScreenCapture| | + | * [[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]] <small>(scripted)</small> |
− | * [[Documentation/Nightly/Modules/DataStore| | + | * [[Documentation/Nightly/Modules/DataStore|Data Store]] <small>(loadable)</small> |
− | * | + | * DICOM Patcher <small>(scripted)</small> |
− | * | + | * BRAINS Strip Rotation <small>(cli)</small> |
− | * | + | * EMSegment Transform To New Format <small>(cli)</small> |
<span id='Modules_by_category_Utilities_BRAINS'></span> | <span id='Modules_by_category_Utilities_BRAINS'></span> | ||
=== BRAINS === | === BRAINS === | ||
− | * | + | * BRAINS Transform Convert <small>(cli)</small> |
<span id='Modules_by_category_Wizards'></span> | <span id='Modules_by_category_Wizards'></span> | ||
== Wizards == | == Wizards == | ||
− | * [[Documentation/Nightly/Modules/CompareVolumes| | + | * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] <small>(scripted)</small> |
+ | <span id='Modules_by_category_Developer_Tools'></span> | ||
+ | == Developer Tools == | ||
+ | * [[Documentation/Nightly/Modules/Cameras|Cameras]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/EventBroker|Event Broker]] | ||
+ | * DoubleArrays <small>(loadable)</small> | ||
+ | <span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span> | ||
+ | === DICOM Plugins === | ||
+ | * DICOMParametricMapPlugin | ||
+ | * DicomUltrasoundPlugin | ||
+ | * DICOMSegmentationPlugin | ||
+ | * DICOMSlicerDataBundlePlugin | ||
+ | * DICOMTID1500Plugin | ||
+ | * [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]] | ||
+ | * DICOMScalarVolumePlugin | ||
+ | * DICOMDiffusionVolumePlugin | ||
+ | * DICOMLongitudinalPETCTPlugin | ||
+ | * DicomSroImportPlugin | ||
+ | * [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] | ||
+ | * DicomRtImportExportPlugin | ||
+ | * MultiVolumeImporterPlugin | ||
|} | |} |
Latest revision as of 02:12, 27 November 2019
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