Difference between revisions of "Documentation/Nightly/Modules/Calculator"

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Author: FIRSTNAME LASTNAME, AFFILIATION<br>
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'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer
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Contributor1: FIRSTNAME LASTNAME, AFFILIATION<br>
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Contributor2: FIRSTNAME LASTNAME, AFFILIATION<br>
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Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email><br>
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Contact: FIRSTNAME LASTNAME, <email>john@doe.org</email><br>
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'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]
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|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
 
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“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
 
  
 
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|“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
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Below, we describe the Instructions Guide to use Calculator:
 
Below, we describe the Instructions Guide to use Calculator:
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# Open 3DSlicer and download “Calculator” using the “Extension Manager”
 
# Open 3DSlicer and download “Calculator” using the “Extension Manager”
 
# Import DICOM data from a CT-scan (better with non-enhanced series)
 
# Import DICOM data from a CT-scan (better with non-enhanced series)
 
# Open “Crop Volume” module  
 
# Open “Crop Volume” module  
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  * “Create a new annotation ROI” (Region Of Interest)
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#* “Create a new annotation ROI” (Region Of Interest)
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  * Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.  
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#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.  
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  * Create a new volume (name will be: “name cropped”)
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#* Create a new volume (name will be: “name cropped”)
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  * Click “Apply” button
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#* Click “Apply” button
 
# Open “Calculator” module:
 
# Open “Calculator” module:
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  * Select volume: “name cropped”
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#* Select volume: “name cropped”
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  * Choose threshold (houndfields units) minimum and maximun to fit to the stone
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#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
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  * If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
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#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
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  * Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
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#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
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  * Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
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#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
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  * Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)
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#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)
  
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Latest revision as of 16:51, 7 November 2019

Home < Documentation < Nightly < Modules < Calculator


For the latest Slicer documentation, visit the read-the-docs.


Introduction and Acknowledgements


Authors: Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email>

License: Slicer License

Module Description

Calculator.png
“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.

Use Cases

N/A

Tutorials

Below, we describe the Instructions Guide to use Calculator:

  1. Open 3DSlicer and download “Calculator” using the “Extension Manager”
  2. Import DICOM data from a CT-scan (better with non-enhanced series)
  3. Open “Crop Volume” module
    • “Create a new annotation ROI” (Region Of Interest)
    • Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
    • Create a new volume (name will be: “name cropped”)
    • Click “Apply” button
  4. Open “Calculator” module:
    • Select volume: “name cropped”
    • Choose threshold (houndfields units) minimum and maximun to fit to the stone
    • If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
    • Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
    • Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
    • Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)
Screenshot

Panels and their use

N/A

Similar Modules

N/A

References

N/A

Information for Developers

Work in progress
 Section under construction.


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